EY710392

Overview
NameEY710392
Unique NameEY710392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1001
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710392_ssr192 microsatellite EY710392_ssr192:192..206. BLAST: Citrus ESTs to Prunus persica proteins V1
EY710392_ssr306 microsatellite EY710392_ssr306:306..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.709e-15
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  415 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDK 543
            YRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT  +    AYDK
Sbjct:   83 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTA-EEAALAYDK 124          

HSP 2 Score: 26.9498 bits (58), Expect = 2.709e-15
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  354 SPKPVPMKTVGCPPPKPAKL 413
            SPKPV MK  G    KP KL
Sbjct:   63 SPKPVSMKQTGTSAAKPTKL 82          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.824e-14
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  406 RSFYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDKGGLTTYV--ANFPRAQLSQNKFQNGVSKSVEKFSKIQNPSLFSLQWDAKIEKPFCKKIR 714
            +  YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT  +    AYD   L  Y     F R    Q + ++G       F+ + +        DAK+++  C+ +R
Sbjct:   90 QKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTA-EEAAMAYD---LAAYKLRGEFARLNFPQFRHEDGYYGGGSCFNPLHS------SVDAKLQE-ICQSLR 183          

HSP 2 Score: 20.7866 bits (42), Expect = 4.824e-14
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  354 SPKPVPMKTV 383
            +PKPVPMK +
Sbjct:   78 APKPVPMKNM 87          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.106e-13
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  406 RSFYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDKGGLTTYVANFPRAQLSQNKFQNGVSKSVEKFSKIQNPSLFSLQWDAKIEKPFCKKIR 714
            ++ YRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+T  K    AYD+           R  +++  F N + + +       NP   S+  D K++   CK +R
Sbjct:   68 KNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEK-AALAYDQAAFQL------RGDIAKLNFPNLIHEDM-------NPLPSSV--DTKLQ-AICKSLR 153          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.887e-13
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  385 AVLRPSRRSFYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDKGGLTTYVANFPRAQLSQNKFQNGVSKS 624
            +V +P++   YRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT  +    AYD+        +  R      ++Q G S S
Sbjct:  135 SVSKPAK--LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTA-EEAALAYDRAAFKLR-GDSARLNFPALRYQTGSSPS 210          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.464e-13
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  415 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDK 543
            YRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT  +    AYDK
Sbjct:  152 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTA-EEAALAYDK 193          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.489e-13
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  400 SRRSFYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDKGGL----TTYVANFPRAQLSQNK 600
            S    YRGVRQRHWGKWVAEIR P+NRTRLWLGTFDT  +    AYD+        T   NFP   L++ +
Sbjct:  182 SATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTA-EEAAMAYDREAFKLRGETARLNFPELFLNKQE 251          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.558e-12
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
Query:  403 RRSFYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDK 543
            ++  YRGVRQRHWGKWVAEIRLP+NR R+WLGT+DT  +   +AYD+
Sbjct:  132 KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTA-EAAAYAYDR 177          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.647e-12
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  415 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYD 540
            YRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+T  +    AYD
Sbjct:  232 YRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETA-EQAAMAYD 272          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.069e-12
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  415 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDK 543
            YRGVRQR WGKWVAEIRLPKNRTRLWLGTF+T ++    AYD+
Sbjct:  111 YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQE-AALAYDQ 152          
BLAST of EY710392 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.012e-11
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  415 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGRKNPHWAYDKGGLT----TYVANFPRAQLSQNKFQNGVSKSVEKFSKIQNPSLFSLQ 672
            YRGVRQR WGKWVAEIR P++R RLWLGTFDT  +    AYD+        +   NFP   +++    +  + S +K  +   PS  +L+
Sbjct:  143 YRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTA-EEAAMAYDRQAFKLRGHSATLNFPEHFVNKESELHDSNSSDQKEPETPQPSEVNLE 231          
The following BLAST results are available for this feature:
BLAST of EY710392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ERF58_ARATH2.709e-1581.40Ethylene-responsive transcription factor ERF058 OS... [more]
ERF60_ARATH4.824e-1444.76Ethylene-responsive transcription factor ERF060 OS... [more]
ERF56_ARATH1.106e-1344.66Ethylene-responsive transcription factor ERF056 OS... [more]
ERF55_ARATH1.887e-1351.25Ethylene-responsive transcription factor ERF055 OS... [more]
RAP24_ARATH2.464e-1381.40Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF53_ARATH5.489e-1354.93Ethylene-responsive transcription factor ERF053 OS... [more]
ERF61_ARATH3.558e-1265.96Ethylene-responsive transcription factor ERF061 OS... [more]
ERF62_ARATH4.647e-1276.19Ethylene-responsive transcription factor ERF062 OS... [more]
ERF57_ARATH6.069e-1276.74Ethylene-responsive transcription factor ERF057 OS... [more]
ERF54_ARATH3.012e-1142.22Ethylene-responsive transcription factor ERF054 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-107-E03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710392 ID=EY710392; Name=EY710392; organism=Citrus sinensis; type=EST; length=1001bp
CAAGTGCTTCTCCTTCTTCTTATTCTTCCTCTTCTTCTACTCTTCCCCCT
TCTACTTCTTATAATTACCCGTCTTACCCGCCTCCTTTTCCAACAATTGC
ATCACAGTCCAATTTGTTGTATCCTGATGCGTGCTCTACGTCGTCCACTC
ATCTATTTGCTAATGGGTTGTCGATGAATGACTTAGGTCTCCAGCAGCAG
CAGCAGCATTATCAACAGGGCACTGTTGGGCTAAATAACCTTAACCTATT
CCAGATTCAGCAGATCCAAGCACAGATCCAGCTTCAAAATCCAAACTTTT
GGCCACAGCAGCAGCAGAAAAGTCATCTTTACCCTCAGGGTTTGAACTTC
TTCTCCCCGAAGCCAGTCCCGATGAAGACGGTGGGCTGTCCTCCGCCCAA
GCCGGCGAAGCTTTTACAGAGGAGTTAGACAGCGTCATTGGGGCAAATGG
GTCGCTGAAATCCGCTTGCCCAAGAACCGGACTCGGCTCTGGCTCGGCAC
TTTTGACACGGGCCGAAAAAACCCACATTGGGCCTACGATAAAGGCGGCC
TAACAACCTACGTGGCGAACTTTCCTCGGGCTCAACTTTCCCAAAACAAA
TTTCAAAATGGGGTCTCAAAATCAGTGGAAAAGTTCAGCAAAATACAAAA
CCCTTCATTATTTTCCTTACAATGGGATGCGAAAATTGAGAAACCATTTT
GTAAAAAAATTAGACCAAAAAACACCAAAAACTTGGGGAATTATAAAAAA
AAAAAAAAAACCAAAAATAATACCTCCGCCCCAAAAAGAAAACAAAAAAT
TCTTTCCCGAAGAAAATAAAAAAAATTTTGACAGTTCCATGGAAGAGGAG
AAACCAAGAAAAGAGCAAAGGGAGATACAGAGAGTTTAAAAAAAAGGAGA
TGTGAATATTTTATGTAGGTAAAGTGAGGGAAAAATAAGAAGGGGGGAAA
TTCCATATCTCTCACGATGTATTTTGGGAGAATAAATAGAAAAAGATAAT
G
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