EY710343
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.042e-60 Identity = 97/123 (78.86%), Postives = 113/123 (91.87%), Query Frame = 2
Query: 5 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI GWIPCLEFELE +VYRE+++SPGYY+G
Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDG 123 HSP 2 Score: 42.743 bits (99), Expect = 1.042e-60 Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDA 422
GRYW MWKLPM+GCTDA
Sbjct: 123 GRYWVMWKLPMFGCTDA 139 HSP 3 Score: 31.5722 bits (70), Expect = 1.042e-60 Identity = 18/34 (52.94%), Postives = 20/34 (58.82%), Query Frame = 1
Query: 445 LGRAHKEYPTFLTSEITELNNKRQVQCISFHCYQ 546
L A K YPT I +NKRQVQCISF Y+
Sbjct: 146 LQEASKTYPTSHI-RIIGFDNKRQVQCISFIAYK 178
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 5.844e-58 Identity = 97/123 (78.86%), Postives = 109/123 (88.62%), Query Frame = 2
Query: 5 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MA SMISSATVA +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R IPCLEFELE G+VYREH++SPGYY+G
Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDG 123 HSP 2 Score: 41.9726 bits (97), Expect = 5.844e-58 Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDAN 425
GRYWTMWKLPM+GC D++
Sbjct: 123 GRYWTMWKLPMFGCNDSS 140 HSP 3 Score: 25.7942 bits (55), Expect = 5.844e-58 Identity = 15/34 (44.12%), Postives = 18/34 (52.94%), Query Frame = 1
Query: 445 LGRAHKEYPTFLTSEITELNNKRQVQCISFHCYQ 546
L K YP+ I +NKRQVQ ISF Y+
Sbjct: 146 LEECKKAYPSAFI-RIIGFDNKRQVQIISFIAYK 178
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 7.602e-58 Identity = 93/123 (75.61%), Postives = 106/123 (86.18%), Query Frame = 2
Query: 5 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASSM+S+A VA NRAS AQASMVAPFTGLKS+SAFP T+KT DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYY+G
Sbjct: 1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDG 123 HSP 2 Score: 44.669 bits (104), Expect = 7.602e-58 Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDA 422
GRYWTMWKLPM+GCTDA
Sbjct: 123 GRYWTMWKLPMFGCTDA 139 HSP 3 Score: 25.7942 bits (55), Expect = 7.602e-58 Identity = 14/29 (48.28%), Postives = 16/29 (55.17%), Query Frame = 1
Query: 460 KEYPTFLTSEITELNNKRQVQCISFHCYQ 546
K YP I +N RQVQCISF Y+
Sbjct: 151 KAYPDCY-GRIIGFDNVRQVQCISFLAYK 178
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.288e-57 Identity = 96/125 (76.80%), Postives = 110/125 (88.00%), Query Frame = 2
Query: 5 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASSMISS TVAT A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R W+PCLEFELE G+VYRE+H+SPGYY+G
Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDG 124 HSP 2 Score: 43.8986 bits (102), Expect = 1.288e-57 Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDAN 425
GRYWTMWKLPM+GCTD++
Sbjct: 124 GRYWTMWKLPMFGCTDSS 141 HSP 3 Score: 27.7202 bits (60), Expect = 1.288e-57 Identity = 16/34 (47.06%), Postives = 18/34 (52.94%), Query Frame = 1
Query: 445 LGRAHKEYPTFLTSEITELNNKRQVQCISFHCYQ 546
L A K YP I +N RQVQCISF Y+
Sbjct: 147 LEEAKKAYPQSFI-RIIGFDNVRQVQCISFIAYK 179
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.289e-57 Identity = 94/120 (78.33%), Postives = 107/120 (89.17%), Query Frame = 2
Query: 14 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYY+G
Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDG 121 HSP 2 Score: 38.1206 bits (87), Expect = 1.289e-57 Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDAN 425
GRYWTMW+LP++G TD++
Sbjct: 121 GRYWTMWRLPLFGATDSS 138 HSP 3 Score: 25.0238 bits (53), Expect = 1.289e-57 Identity = 18/45 (40.00%), Postives = 21/45 (46.67%), Query Frame = 1
Query: 400 PCMGAQMQTQGFEGGLGRAHKEYPTFLTSEITELNNKRQVQCISF 534
P GA +Q + L EYP I +N RQVQCISF
Sbjct: 130 PLFGATDSSQVLKE-LADCKAEYPDSFI-RIIGFDNVRQVQCISF 172
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 3.698e-57 Identity = 96/125 (76.80%), Postives = 110/125 (88.00%), Query Frame = 2
Query: 5 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASSMISS TVAT A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R W+PCLEFELE G+VYRE+H+SPGYY+G
Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDG 124 HSP 2 Score: 43.8986 bits (102), Expect = 3.698e-57 Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDAN 425
GRYWTMWKLPM+GCTD++
Sbjct: 124 GRYWTMWKLPMFGCTDSS 141 HSP 3 Score: 27.7202 bits (60), Expect = 3.698e-57 Identity = 16/34 (47.06%), Postives = 18/34 (52.94%), Query Frame = 1
Query: 445 LGRAHKEYPTFLTSEITELNNKRQVQCISFHCYQ 546
L A K YP I +N RQVQCISF Y+
Sbjct: 147 LEEAKKAYPQSFI-RIIGFDNVRQVQCISFIAYK 179
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 8.159e-57 Identity = 91/123 (73.98%), Postives = 105/123 (85.37%), Query Frame = 2
Query: 5 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+ FP T+KTN+DITSI SNGG+VQCMKVWP G+KKFETLSYLPPL+ E L E+ YL+RSGWIPCLEFELE G VYREH + PGYY+G
Sbjct: 1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDG 123 HSP 2 Score: 44.669 bits (104), Expect = 8.159e-57 Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDA 422
GRYWTMWKLPM+GCTDA
Sbjct: 123 GRYWTMWKLPMFGCTDA 139 HSP 3 Score: 25.409 bits (54), Expect = 8.159e-57 Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1
Query: 484 SEITELNNKRQVQCISFHCYQ 546
+ I +N RQVQCISF Y+
Sbjct: 158 ARIIGFDNVRQVQCISFLAYK 178
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.233e-56 Identity = 90/118 (76.27%), Postives = 102/118 (86.44%), Query Frame = 2
Query: 20 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
ISS+ +AT NR + QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYY+G
Sbjct: 4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDG 121 HSP 2 Score: 47.3654 bits (111), Expect = 1.233e-56 Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDANPRF*RRVGEGPQGIPN--ISYVRNNRIEQQASSAMHLISLLPSPPGV 560
GRYWTMWKLPM+GCTD + + + VGE + PN I + + I Q + ++ PPGV
Sbjct: 121 GRYWTMWKLPMFGCTD-SAQVMKEVGECKKEYPNAFIRVIGFDNIRQ----VQCISFIVAKPPGV 180
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 3.967e-56 Identity = 90/124 (72.58%), Postives = 111/124 (89.52%), Query Frame = 2
Query: 5 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASS++SSA VAT R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYY+G
Sbjct: 1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDG 122 HSP 2 Score: 44.669 bits (104), Expect = 3.967e-56 Identity = 16/17 (94.12%), Postives = 17/17 (100.00%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDA 422
GRYWTMWKLPM+GCTDA
Sbjct: 122 GRYWTMWKLPMFGCTDA 138 HSP 3 Score: 26.1794 bits (56), Expect = 3.967e-56 Identity = 15/31 (48.39%), Postives = 17/31 (54.84%), Query Frame = 1
Query: 454 AHKEYPTFLTSEITELNNKRQVQCISFHCYQ 546
A K YP I +N RQVQCISF Y+
Sbjct: 148 AKKAYPQAWI-RIIGFDNVRQVQCISFIAYK 177
BLAST of EY710343 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 1.928e-55 Identity = 89/123 (72.36%), Postives = 106/123 (86.18%), Query Frame = 2
Query: 5 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYNG 373
MASSMISSAT+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLP L+ L KE++YL+RS WIPCLEFELE+G+V+R++ P YY+G
Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDG 123 HSP 2 Score: 43.5134 bits (101), Expect = 1.928e-55 Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 3
Query: 372 GRYWTMWKLPMYGCTDA 422
GRYWTMWKLPM+GCTD+
Sbjct: 123 GRYWTMWKLPMFGCTDS 139 HSP 3 Score: 29.261 bits (64), Expect = 1.928e-55 Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 1
Query: 400 PCMGAQMQTQGFEGGLGRAHKEYPTFLTSEITELNNKRQVQCISFHCYQ 546
P G Q E L KEYP I +N RQVQCISF Y+
Sbjct: 132 PMFGCTDSAQVLEE-LENCKKEYPNAFI-RIIGFDNVRQVQCISFIAYK 178 The following BLAST results are available for this feature:
BLAST of EY710343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY710343 ID=EY710343; Name=EY710343; organism=Citrus sinensis; type=EST; length=984bpback to top |