EY710342

Overview
NameEY710342
Unique NameEY710342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY710342 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 8.451e-88
Identity = 169/207 (81.64%), Postives = 174/207 (84.06%), Query Frame = 1 
Query:   25 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFILSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF*AAGN*RKLERSLMPGPAEPQDALWLGKSLQVRNLCKHYTKKLLGIECRVGRFHN 636
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEF        L+ S    PAEPQDA  L K L    LCKHYTK   GIECRVGRFHN
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKES-DAWPAEPQDAYGLEK-LATEELCKHYTKD-FGIECRVGRFHN 204
[Close]
BLAST of EY710342 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 4.194e-87
Identity = 168/207 (81.16%), Postives = 173/207 (83.57%), Query Frame = 1 
Query:   25 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFILSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF*AAGN*RKLERSLMPGPAEPQDALWLGKSLQVRNLCKHYTKKLLGIECRVGRFHN 636
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEF        L+ S    PAEPQDA  L K L    LCKHYTK   GIECRVGRFHN
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKES-DAWPAEPQDAYGLEK-LATEELCKHYTKD-FGIECRVGRFHN 204
[Close]
BLAST of EY710342 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 6.056e-86
Identity = 158/205 (77.07%), Postives = 171/205 (83.41%), Query Frame = 1 
Query:   25 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFILSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF*AAGN*RKLERSLMPGPAEPQDALWLGKSLQVRNLCKHYTKKLLGIECRVGRFHN 636
            MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEF          +     PAEPQDA  L K L    LCKHY K   GIECR+GRFHN
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEK-LATEELCKHYNKD-FGIECRIGRFHN 203
[Close]
BLAST of EY710342 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 7.910e-86
Identity = 161/194 (82.99%), Postives = 166/194 (85.57%), Query Frame = 1 
Query:   55 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFILSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF*AAGN*RKLERSLMPGPAEPQDALWLGKSLQVRNLCKHYTKKLLGIECRVGRFHN 636
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEF        L+ S    PAEPQDA  L K L    LCKHYTK   GIECRVGRFHN
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKES-DAWPAEPQDAYGLEK-LATEELCKHYTKD-FGIECRVGRFHN 197
The following BLAST results are available for this feature:
BLAST of EY710342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ8.451e-8881.64GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI4.194e-8781.16GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH6.056e-8677.07GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ7.910e-8682.99GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710342 ID=EY710342; Name=EY710342; organism=Citrus sinensis; type=EST; length=970bp
CTCAAAGTTCAGGTGTTTTTCAGAATGGGAAGTACTGAAGGAACCTATGG
TGCATACACCTATGAGGAGCTTGAGAGGGAACCTTACTGGCCTTCCGAGA
AGCTCCGAATTTCTGTCACTGGGGCAGGTGGTTTTATTGCCTCCCACATT
GCTCGGCGTCTGAAGAGTGAAGGCCATTACATTATTGCTTCTGACTGGAA
GAAGAATGAGCACATGACTGAGGATATGTTCTGTCATGAATTCCACCTTG
TTGACCTTAGGGTCATGGACAATTGCTTGAAAGTTACTAAGGGGGTTGAC
CATGTGTTTAACCTTGCTGCTGATATGGGTGGTATGGGCTTTATTCTGTC
CAACCACTCTGTCATCATGTATAACAATACCATGATCAGCTTCAACATGC
TTGAGGCTTCTAGGATCAGTGGAGTAAAGAGGTTTTTCTATGCCTCTAGT
GCCTGCATCTATCCCGAATTTTAAGCAGCTGGAAACTAACGTAAGCTTGA
AAGGAGTCTGATGCCTGGCCCCGCTGAGCCTCAAGATGCTTTATGGCTTG
GAAAAAGCTTGCAAGTGAGGAATTTGTGTAAACACTACACGAAAAAACTT
TTGGGAATTGAATGTCGTGTTGGAAGATTCCACAATTTTTTTGGGCCCTT
TTGGAAACATGGAAAGGGGGGGAAGGGAAAAAAACTCCCCGGTTGGCTTT
TTTTTGCCCAAAGGCTTCCTTAACTTTCCACTGAAAAATTTTGAAAAGGG
GGGGAAAATGGAATTTCAAACTCCTTTTTTTTCCCCTTTCTTTGAAGAAA
AGGGGTTAAAGGGGGGGCCCAAAATAAAAAAAATCAAAAATTCCCCGTGC
ACCCCGAAAAAATTTGGGTTGTGATAAGGAAAGGGTTTACCCCTTAAAAC
AAATATGTGGTTGAAATTATTTTCTTTTTTCTTTTTTTTTAAGGAGAAAA
AAAAAAAACTCCCACCCTAT
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