EY710336

Overview
NameEY710336
Unique NameEY710336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length986
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.765e-48
Identity = 92/172 (53.49%), Postives = 116/172 (67.44%), Query Frame = 2
Query:  179 PTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKEVILIE 694
            P+F F+ YM  K   +++AL+ A+P+Q P KIHE+MRYSLLAGGKR+RP LC+A+CELVGG++S+ MP ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNH VFGE              FEH+A  T+ VS+ R+VRA  E             QV D+  EG   + +E
Sbjct:   75 PSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLE 246          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 9.682e-47
Identity = 97/169 (57.40%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  182 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG--VSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKEV 682
            +F F  Y+ +K++ V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ES  MP ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNHKVFGE              FEH+A+ T    VS  RVVRA  E             QV D+  EG ++
Sbjct:   73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDL 241          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.265e-46
Identity = 97/174 (55.75%), Postives = 117/174 (67.24%), Query Frame = 2
Query:  164 VKIALPTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKEV 682
            +K +  +F F  Y+  K+  V+KALD A+P++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ESL MP  CA+EM HTMSLIHDDLP +DNDDLRRGKPTNHKV+GE              FEH+A+ T   VS  RVVRA  E             QV D+  EG ++
Sbjct:   63 LKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDL 236          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.652e-46
Identity = 91/164 (55.49%), Postives = 113/164 (68.90%), Query Frame = 2
Query:  182 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REG 673
            +F F+ YM  K+  V+KAL++A+ ++ P KIHE+MRYSLLAGGKR+RP+LCIA+CEL GG ES+ MP ACA+EM HTMSL+HDDLP +DNDDLRRGKPTNHKVFGE              FEH+A  T GVS++R+VR   E             QV D+  EG
Sbjct:   63 SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEG 226          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.184e-44
Identity = 102/237 (43.04%), Postives = 133/237 (56.12%), Query Frame = 2
Query:    5 LLKNSPLNY--FKMPFMIPFPNMKPFPMKN-----NACHAENLASVKPSQGAESIMNLKPVKIALPTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKEVILIE 694
            L+ N  L+Y  F     IP  N K  P  N     +      +A+ K  +  E+    +P       F F+ Y+T K+  V+KALDEA+ ++ P  IHEAMRYSLLAGGKR+RP+LC+A+CELVGG++   M  ACA+EM HTMSLIHDDLP +DNDDLRRGKPTNHK++GE              FEH+   T GV+  R+V A  E             QV D+   G   + +E
Sbjct:   16 LVFNQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-------FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLE 245          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.807e-43
Identity = 90/173 (52.02%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  182 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKEVILIEIG 700
            TF+F+ YM SK++ V+KAL+EA+P+  P KIHEAMRY++LA GKR+RP+LC+ASCELVGG E+  MP ACA+EM HTMSLI DDLP +DNDDLRRGKPT HKV+GE              FEH+   T  +S++R+V A  E             Q  D+  EG +  L E+G
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLD--LNEVG 250          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.729e-41
Identity = 85/166 (51.20%), Postives = 109/166 (65.66%), Query Frame = 2
Query:  182 TFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKE 679
            +F F+ YM SK++ +++ALDEA+P+  P  IH+AMRY++LAGGKR+RP+LC+A+CELVGG+E L +  ACA+EM HTMSLI DDLP +DNDDLRRGKPT HKVFGE              FEH+      VS+ ++VRA  E             Q  DL  EG E
Sbjct:   78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT--EADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLE 241          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.267e-38
Identity = 81/160 (50.62%), Postives = 104/160 (65.00%), Query Frame = 2
Query:  185 FQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAFTEXXXXXXXXXXXXXQVTDL 661
            F F+ YM  K++ V+ ALD ++P++ P  + EA+RYSLLAGGKR+RP+LCIA CELVGGDE+  M  ACA+EM HT SLIHDDLP +DN DLRRGKPTNHKV+GE              FEH+   + G V+ +R++RA  E             Q+ DL
Sbjct:   64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDL 223          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.508e-36
Identity = 77/183 (42.08%), Postives = 107/183 (58.47%), Query Frame = 2
Query:  155 LKPVKIALPTFQFEEYMTSKSKKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL*REGKEVILIEIGN 703
            +KP++     F    Y+  + + V+  L++++P  +P  I++++RYSL AGGKRIRP+LC+ASCEL GG   + +P ACALEM HTMSLIHDDLPA+DND  RRGKPTNH ++GE              FE +A +T  V  D +V+   +             Q+ DL  EGK    +E  N
Sbjct:    1 MKPLQT---NFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLN 180          
BLAST of EY710336 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.922e-35
Identity = 80/179 (44.69%), Postives = 107/179 (59.78%), Query Frame = 2
Query:  152 NLKPVKIALPTFQFEEYMTSKSKKVDKALDEALPM--------QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKT-VGVSTDRVVRAFTEXXXXXXXXXXXXXQVTDL 661
            N +   IA    +F  YM +K+K ++KALD ++P+        +   ++H+AMRY+LL GGKR+RP+LC+ +CELVGG ES  MP ACA+EM H  SLI DDLP +D+D LRRGKPTNHKVFGE T             +   A T +GV+++RV+RA  E             Q  DL
Sbjct:   19 NRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADL 197          
The following BLAST results are available for this feature:
BLAST of EY710336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GGPPS_HEVBR1.765e-4853.49Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH9.682e-4757.40Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL1.265e-4655.75Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO1.652e-4655.49Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN1.184e-4443.04Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH3.807e-4352.02Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP4_ARATH2.729e-4151.20Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.267e-3850.63Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
CRTE_CYAPA4.508e-3642.08Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP6_ARATH2.922e-3544.69Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-F05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710336 ID=EY710336; Name=EY710336; organism=Citrus sinensis; type=EST; length=986bp
AGCTCTCCTCAAGAACTCCCCACTCAATTATTTCAAAATGCCCTTTATGA
TCCCATTTCCGAACATGAAACCCTTTCCCATGAAAAATAACGCCTGCCAC
GCTGAAAACTTAGCTTCGGTAAAACCATCCCAGGGTGCAGAATCGATCAT
GAACCTCAAGCCGGTAAAGATAGCTCTACCAACTTTCCAGTTTGAAGAAT
ACATGACCAGCAAGTCGAAAAAAGTGGACAAAGCATTAGATGAGGCATTG
CCCATGCAACATCCAGAAAAAATACACGAGGCCATGAGATACTCTCTTCT
TGCTGGAGGCAAGCGTATCCGTCCTGTTCTATGCATTGCTTCATGCGAAT
TAGTAGGAGGAGATGAGTCCTTGGTGATGCCAATGGCTTGTGCACTAGAG
ATGACTCACACGATGTCCCTCATTCATGATGATCTCCCTGCACTGGACAA
CGATGATCTTAGACGAGGAAAGCCTACAAATCACAAAGTCTTTGGTGAAC
CAACAGCAATTCTTGCAGGTGATGCTCTGCTTGCCCTTGCTTTTGAACAT
GTAGCAGCCAAGACCGTCGGTGTGTCAACTGACCGCGTGGTTCGAGCCTT
TACGGAGCTGGGTTCCGCACTGGGAGCAAAAGGGCTCCTGAAAGGACAAG
TTACTGACCTTTGACGTGAAGGAAAAGAGGTAATTTTGATTGAAATTGGA
AATACTTTCATGGGCCCAAAACCCCCCAAACTTTTTTTAAAGGGCTCTGT
TGGTTGGCGGAAGGGAAAAACCGAAGGAAGAAAAGGTGATTGAAAATAAA
AAAAAATTTAAAAAATATAGGCAAGGGGGGAAAGGAAATTTTTTATTTTC
AGGGGGGGGGAATAAATTTTTTAAAAGGGGGGACAAAAAACTCCTTCTCC
CAAGGGGGTTGGGGAGAAAAAAGAGGGCGGGGAGAAAAAAAATTTTTGGG
GGGGAGGGGGAAAAAAAGGGGGCGCCCCCATTTTAC
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