EY710297

Overview
NameEY710297
Unique NameEY710297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1126
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710297_ssr1066 microsatellite EY710297_ssr1066:1066..1077. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710297 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.389e-44
Identity = 103/202 (50.99%), Postives = 127/202 (62.87%), Query Frame = 3
Query:   18 MTALADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLITFGLALGYATNPPVSIKISALVRIKPVAGVARRS*WNLTPRFSILESFEF 614
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG   F L+L Y           A++ + PVAG ++ +   L P     +SF+F
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKTT--GLDPSILSFDSFDF 192          
BLAST of EY710297 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.782e-43
Identity = 101/202 (50.00%), Postives = 126/202 (62.38%), Query Frame = 3
Query:   18 MTALADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLITFGLALGYATNPPVSIKISALVRIKPVAGVARRS*WNLTPRFSILESFEF 614
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG   F L+L Y           A++ + PVAG ++ +   L P     +SF+F
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKTT--GLDPSILSFDSFDF 192          
BLAST of EY710297 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.019e-34
Identity = 73/132 (55.30%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  156 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLITFGLALGYATNPPVSIKISALVRIKPVAG 551
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG   F +ALG+A     SI  SAL+ I PVAG
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG 172          
BLAST of EY710297 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.880e-26
Identity = 67/163 (41.10%), Postives = 94/163 (57.67%), Query Frame = 3
Query:   81 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLITFGLALGYATNPPVSIKISALVRIKPVAG 551
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG   F LALG+ +N  + +  SAL+ + PVAG
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG 195          
BLAST of EY710297 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.644e-26
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  156 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLITFGLAL---GYATNPPVSIKISALVRIKPVAGVAR 560
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG   F +AL   GY++N    +KIS L+ I PV G  +
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK 174          
The following BLAST results are available for this feature:
BLAST of EY710297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN5.389e-4450.99Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI7.782e-4350.00Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.019e-3455.30Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH0_CHEAL3.880e-2641.10Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
CLH2_ARATH8.644e-2644.20Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-C01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710297 ID=EY710297; Name=EY710297; organism=Citrus sinensis; type=EST; length=1126bp
CAAACAATTTAGACTCAATGACCGCATTAGCCGATAGCAAGCCCGTCTCC
GTTGAAGCTAAGCCTGGTTTGGCAACGGCCTTACTATCAGTTTTTTCAAG
TGGACCTTATTCTCCGAAACTCAAGACAGTGAATAAACCATGGTTTAATA
GTTTTCCTCCAAAGCCGTTGAATATTGTTTATCCAGAAGAAAAAGGAACA
TATGAAGTTATTTTGTTCTTCCACGGCACTGCTCTCAGCAACACAAGCTA
TTCCAATCTCTTAGACCACTTGGCTTCCCATGGATACATCGTTGTTGCCC
CTCAGTTATACGATTTTCTGCCGCCGAAAGGAAACGGAGAAGTTAACGAT
GCAGCAAACGTCCTCAACTGGTTATCAACAGGCCTTCAATCAGAACTCCC
GGAAAATGTTGAAGCTAACCTAAACTACGTTGCTCTTATGGGACACAGTC
GCGGAGGACTAATAACGTTCGGTCTGGCACTTGGCTATGCAACAAATCCT
CCAGTTAGCATTAAAATTTCAGCATTAGTAAGGATAAAACCAGTTGCCGG
GGTAGCCCGCCGTTCATAGTGGAACTTGACCCCCCGATTTTCCATTCTGG
AATCATTCGAGTTCCTCAATTCCTGTTACTGGAATTGGGCACCGGAATCG
GTGGGTGTGACAAAAGTGCAGGCAGCCTTTGTGCCCCCGGAAAAAAAAAA
AACCCATGGAGCCATTTTTTTCAAAGGGGGGACATTTTTTCCAAAATTAT
GCACCATTTTTGATGGTAAGGGGTTTAGGGGTCCACTTGGGAATTTTTTT
AAATGAAAAATCCCCCCAGGGGGCCAAAAAAAAATTTGGGGCAAATTTTT
AAAAAATTTTTTTTGGGCACAAAAATGGGGGAAAAAGAAAAACAAAAAGG
GGGTTATCCCCTCAGAAGAAGTGAAATATGGTTGTTTGTGGTTGGGGTGA
GTTTTTTGGCTCGGTCGTGGGGATTTTTTTTTTTTTTGAAGGGAGGACGG
GCCACTATTATTTTTTTATTTGAGAGAGAGGGGGGGGGAGGGAAGGGATG
TTGTGTTGTGGGGGAGAGGAGGAGGAGAGAAATTAATTTATTTAATAATA
TTTTTTTGATGTTGCGGGGGGAGAGG
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