EY710281

Overview
NameEY710281
Unique NameEY710281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710281_ssr4 microsatellite EY710281_ssr4:4..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 6.358e-67
Identity = 121/152 (79.61%), Postives = 130/152 (85.53%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAVAVLG +EGVKGT+ F QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHEL+KSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 2.416e-66
Identity = 119/152 (78.29%), Postives = 130/152 (85.53%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAVAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP DDNRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHEL+KSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.155e-66
Identity = 120/152 (78.95%), Postives = 129/152 (84.87%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAVAVLG +EGVKGT+ F QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHGAPED+ RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.155e-66
Identity = 116/152 (76.32%), Postives = 131/152 (86.18%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAV VL  +EGV GTV F QEG GPTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED+ RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHEL+K+TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 5.382e-66
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAVAVLG ++GVKGT+ F QEGDGPT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHEL+KSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 9.181e-66
Identity = 118/152 (77.63%), Postives = 131/152 (86.18%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            M KAV VL  +EGV GTV FAQEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHGAPEDD RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.489e-65
Identity = 116/152 (76.32%), Postives = 129/152 (84.87%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVK VAVL  +EGV GT+ F QEGDGPTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHGAP+D+ RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHEL+K+TGN GGRVACGI GLQG
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.489e-65
Identity = 118/152 (77.63%), Postives = 129/152 (84.87%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 3.489e-65
Identity = 118/152 (77.63%), Postives = 129/152 (84.87%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 7.772e-65
Identity = 117/151 (77.48%), Postives = 130/151 (86.09%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQ 543
            MVKAVAVL G+EGV+GTV FAQEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHEL+K+TGNAGGR+ACG+IGLQ
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
The following BLAST results are available for this feature:
BLAST of EY710281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC4_MAIZE6.358e-6779.61Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_IPOBA2.416e-6678.29Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ANACO3.155e-6678.95Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC1_MESCR3.155e-6676.32Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC5_MAIZE5.382e-6678.29Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_SPIOL9.181e-6677.63Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PAUKA3.489e-6576.32Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_ORYSJ3.489e-6577.63Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI3.489e-6577.63Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_ZANAE7.772e-6577.48Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710281 ID=EY710281; Name=EY710281; organism=Citrus sinensis; type=EST; length=975bp
ACACTCTCTCTCTCTCTCACTCCCTCTTTCTCTCTACAAGCCCTCTTCAT
TTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAG
CAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTT
GCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCT
CAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAA
ATGGTTGCATGTCTACTGGACCCCACTTTAACCCTGCTGGAAAAGAACAT
GGAGCTCCAGAGGATGATAATCGTCATGCTGGTGATTTAGGAAATGTCAA
TGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTC
CACTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCA
GATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAACAAAAGCACTGG
AAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGGTGAA
GCCTTATCTCATCGGACAATAATAAATTCATTTGATATGGATGTTTTGAG
TGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCAGAATATGATTCT
TGAAAAAAAAAAATCAATAACTTTGTTGGGGAACCTTGGAAGGTTTTTCT
TAAAATCCCCCTCCTTTAATTTTCATTTTTAATTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCCCTCTCAAGAGAATCCAAACCTTAAC
AACCCCGGGGGCAGGGCAAAGTTCCAAAACTTCTTTTTATAAGGGGCCCC
CCAAAAATTTTAATTTTACCGGGGGGCCCCCCCCTTTTTTAAACACCCCC
CCCGGGGAGAGGGGGGAAAAAAAACCCCCGGGGGGGGTTTTACCCCCCCA
CACTTTTTAATATCTCCCCCCCTTT
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