EY684906

Overview
NameEY684906
Unique NameEY684906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 8.400e-97
Identity = 171/215 (79.53%), Postives = 192/215 (89.30%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            PP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ GG EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VTDIACAALNG+KMGDKTLTVRRA   + Q K EQE +L  AQQ I +Q+
Sbjct:  263 PPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQR 477          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 4.169e-96
Identity = 169/215 (78.60%), Postives = 190/215 (88.37%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            PP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD  VTDIACAALNG+KMGDKTLTVRRA   + Q + EQESIL QAQQ + +QK
Sbjct:  222 PPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQK 436          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.609e-95
Identity = 168/215 (78.14%), Postives = 189/215 (87.91%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            PP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QPS NLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD  VTDIACAALNG+KMGDKTLTVRRA   S Q + EQE+IL QAQQ + +QK
Sbjct:  215 PPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQK 429          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.862e-95
Identity = 169/215 (78.60%), Postives = 188/215 (87.44%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            PP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+IFEG  V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG   G+ GG EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA   + Q   EQES+L  AQQ I +Q+
Sbjct:  229 PPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQR 443          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.988e-94
Identity = 168/215 (78.14%), Postives = 189/215 (87.91%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            P  ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR+VEEASNAMALDGIIFEG   +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA   + Q K EQES+L  AQQ I +Q+
Sbjct:  247 PAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQR 461          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 5.096e-94
Identity = 167/214 (78.04%), Postives = 188/214 (87.85%), Query Frame = 3
Query:   12 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAM+LDGIIFEG  V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL  GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA   +   K EQE++L  AQQ I  Q+
Sbjct:  248 PTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQR 461          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 5.634e-93
Identity = 163/215 (75.81%), Postives = 185/215 (86.05%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            PP ANE  +A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD  VTDIACAALNG+KMGDKTLTVRRA   + Q + EQES+L   QQ   +QK
Sbjct:  246 PPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQK 460          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.880e-87
Identity = 154/215 (71.63%), Postives = 183/215 (85.12%), Query Frame = 3
Query:    9 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESILAQAQQHITIQK 653
            PP+ANEQ +A FF+QVM AIGGN+   G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+ AAALGP QP+PNLNLAAVGL  GA GG EGPDR+FVGGLPYYFTE Q++ELLE+FG L GFD+VKD++TGNSKGY FC+Y+D  VTDIACAALNG+++GD+TLTVRRA     + + EQE+IL QAQQ   +++
Sbjct:  280 PPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRAN-QGAEPRPEQENILLQAQQEAQMKR 493          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 3
Query:   24 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 578
            E+A+  FF+  M  +GG +  PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P       PG  S N ++   G+ S  +   +   ++F+GGLP Y  + Q+KELL SFG L  F+LVKD  TG SKGY FC Y D  VTD A A LNG+++GDK L V+RA+
Sbjct:  162 EEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 336          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 3
Query:   24 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 578
            E+A+  FF+  M  +GG +  PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P       PG  S N ++   G+ S  +   +   ++F+GGLP Y  + Q+KELL SFG L  F+LVKD  TG SKGY FC Y D  VTD A A LNG+++GDK L V+RA+
Sbjct:  162 EEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 336          
The following BLAST results are available for this feature:
BLAST of EY684906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
U2A2B_ARATH8.400e-9779.53Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_ORYSJ4.169e-9678.60Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2B_WHEAT4.609e-9578.14Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2A_NICPL7.862e-9578.60Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_NICPL2.988e-9478.14Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2A_ARATH5.096e-9478.04Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2A_ORYSJ5.634e-9375.81Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT7.880e-8771.63Splicing factor U2af large subunit A OS=Triticum a... [more]
U2AF2_MOUSE3.036e-3847.03Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]
U2AF2_HUMAN3.036e-3847.03Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684906 ID=EY684906; Name=EY684906; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCCTTTGGCTAATGAACAGGCAATTGCTACATTCTTTAGC
CAAGTTATGACTGCTATTGGAGGAAATTCTGCTGGTCCTGGTGATGCAGT
AGTGAATGTTTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGA
GAACTGTTGAAGAAGCGAGTAATGCAATGGCATTAGATGGGATTATATTT
GAGGGGGTTGCTGTGAGGGTAAGAAGACCTACGGATTACAACCCTACATT
AGCTGCAGCACTTGGTCCAGGCCAACCAAGTCCGAATCTTAACTTGGCAG
CTGTTGGACTTGCATCAGGTGCAATTGGTGGAGCAGAGGGACCTGATCGG
GTCTTTGTGGGTGGATTACCATACTACTTCACTGAAACTCAGATAAAAGA
GTTGCTCGAGTCTTTTGGGACTCTTCATGGTTTTGACCTCGTTAAGGATA
GAGACACGGGGAACTCTAAAGGATATGGTTTCTGTGTCTATCAGGATCCA
GCGGTGACAGACATAGCATGTGCAGCTCTAAATGGCTTGAAAATGGGTGA
TAAAACTTTAACTGTTCGGCGAGCTACTGCCCACAGTGGGCAATCTAAAA
CTGAACAAGAAAGCATATTAGCCCAGGCTCAACAGCATATAACTATCCAG
AAAAATGGCCCTTACAAACTAGTGGCATGAATACTCTCCGGAGGAGGAAT
GTCTTTATTTTGGAAAAACTCTAGCTAAAAGTTTATTGCTTTGATTGAGG
CAATTACCTGCCTGATGCCCTTGCCGAATGAAGAAGAAAAATTGCAGGAA
ATTTTTAAAAAGAATTTGAAGGGAAAGAATTCGGGTGAAAGATGGAAAGC
CTTGGGGAGATTGTTGTGTGT
back to top