EY684896

Overview
NameEY684896
Unique NameEY684896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684896_ssr469 microsatellite EY684896_ssr469:469..492. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.040e-42
Identity = 85/114 (74.56%), Postives = 92/114 (80.70%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLI 433
            CAACKILRRRC E+CVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR DAV+SMVYEA ARIRDPVYGCAGAI HLQ+QVS             V M+ Q+ NL+ LI
Sbjct:   34 CAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELI 147          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.390e-41
Identity = 83/114 (72.81%), Postives = 92/114 (80.70%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLI 433
            CAACKILRRRC +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR DAV+SMVYEA AR+RDPVYGCAGAI HLQ+QVS             V M+ Q+ +L+ LI
Sbjct:   53 CAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 166          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 8.298e-32
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVS 352
            CA+CK+LRRRC + C+ APYFPP +P+KF I H+VFGASN+ K LQELP  QRADAV+S+V+EA+AR+RDPVYGC GAI +LQ QVS
Sbjct:    9 CASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVS 95          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.669e-30
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVSSMVYEA+AR+RDPVYGC GAI  LQ+Q+
Sbjct:   14 CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQI 99          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.854e-29
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK+LRRRC ++C  +PYF P EP+KF   H+VFGASN+ K L E+PESQRADA +S+VYEA+ R+RDPVYGC GAI  LQ+QV
Sbjct:   46 CAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQV 131          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.498e-28
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C+  C+ APYFPP EP+KF   H++FGASN+ K L EL   QR DAV+S+ YEA AR+RDPVYGC GAI +LQ+QV
Sbjct:   12 CAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQV 97          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.261e-28
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 2
Query:   92 CAACKILRRRCV-EKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CA CK+LRR+CV + CV APYFP  EPYKF I H++FGASN+ K LQEL E+ R+DAV SMVYEA+ARI+DPVYGC G I  L +Q+
Sbjct:   15 CAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQL 101          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.566e-28
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQK 343
            CAACK+LRR+C ++CV APYFPPT P KF   HRVFGASN+ K L +LP  QR D V+S+ YEA ARIRDP+YGC G I  LQ+
Sbjct:    6 CAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSLFYEAEARIRDPIYGCVGLISFLQQ 89          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 3.608e-27
Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C   CV APYFPP EP KF   HR+FGASN+ K L E+   QR DAV+S+ YEA AR++DPVYGC GAI  LQ+QV
Sbjct:   40 CAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQV 125          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.037e-27
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C ++CV APYFPP +P KF   H+VFGASN+ K L EL  +QR DAV+S+ YEA AR+RDPVYGC G I  LQ ++
Sbjct:    8 CAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRL 93          
The following BLAST results are available for this feature:
BLAST of EY684896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LBD1_ARATH3.040e-4274.56LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LBD11_ARATH4.390e-4172.81LOB domain-containing protein 11 OS=Arabidopsis th... [more]
LBD12_ARATH8.298e-3268.97LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD4_ARATH2.669e-3070.93LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD15_ARATH3.854e-2966.28LOB domain-containing protein 15 OS=Arabidopsis th... [more]
LOB_ARATH2.498e-2863.95Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD3_ARATH4.261e-2865.52LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD10_ARATH5.566e-2864.29LOB domain-containing protein 10 OS=Arabidopsis th... [more]
LBD25_ARATH3.608e-2763.95LOB domain-containing protein 25 OS=Arabidopsis th... [more]
LBD36_ARATH8.037e-2761.63LOB domain-containing protein 36 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684896 ID=EY684896; Name=EY684896; organism=Citrus sinensis; type=EST; length=951bp
CCCGCGTCCGCCAAGCTTTAAAGCTTCCCCTTCACAATCCTCTCCAAATC
TTGCAGATCCCCTCTCTCCGCCGCCTATACTTCTTAGCCCTTGTGCTGCC
TGCAAAATCCTCCGCCGCAGATGCGTCGAGAAATGTGTTTTAGCTCCATA
TTTTCCACCAACCGAACCATACAAGTTCACCATTGCTCATAGGGTCTTCG
GTGCAAGCAATATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAACGA
GCAGATGCAGTGAGCAGCATGGTCTATGAAGCAAGTGCCAGAATCCGGGA
TCCTGTTTACGGCTGCGCCGGGGCTATTTGCCATCTCCAGAAACAAGTCA
GTGAGCTTCAGGCTCAGTTAGCCAAGGCACAGGCTGAGCTTGTCACCATG
GAAAGCCAGCAACGCAATTTAATAACTCTAATTTGCATGGAAATGGCACA
ATCTCAAGAACAAGTCTTGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCC
ATGGATACTAGTTGTTTTTTGGATGACAATGGTATTGGATCAGCTTGGGA
GCCCTCTGCGGACATGATCAAGAAAAATTAAAGCAAGATTGATGAAATTT
TAACCTTTTTAAAAGATTATTTACTTAAAGCCAACTATCCTTAAATTATC
AAAGTTTCCTGATCAAAATTCAAGCAATTAAAGGTACGGGAACACAAACA
ACGAAGCGCGCCACGCCAAACCGCCCACACCCCGATCGCGCTAAAACTCC
ACAAGTTGACTCCTCCACCTGGACAACACAACAGTACTAACTAACCAAAC
ACATGACAAACATGCTCCAAACAAAAAAAGCCCCCCCTCCACACTACTCA
ATCTCCAAGACACAACACCTCACCACGTTGGCGCTCACATCCACACACCC
ACCTAACAGTGACCTCCACCTCATCCTTGCGCCCCACCACACGACCGCCC
A
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