EY684883

Overview
NameEY684883
Unique NameEY684883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.091e-37
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 3
Query:   63 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNREGNVR 347
            MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKR HFV+NLIREVAGF PYE+RIT++LKVGKDKRALKV Q KV  S ++K    G+V+
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVGHSQESKEEERGDVQ 95          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.957e-28
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            TGLFVGLNKGHVVTK+E PPRP++RKGKTSKR  F++NLI+EVAG APYE+RIT++LKVGKDKRALKV +RK+    + K  RE
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 87          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.750e-28
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 3
Query:   63 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            M   Q  TGLFVGLNKGHVVT++EL PRP  RKGKTSKR  F++NLI+EVAG APYE+RIT++LKVGKDKRALKV +RK+    + K  RE
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.964e-27
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            TGLFVGLNKGHVVT++EL PRP+ RKGKTSKR  F++ LIREVAG APYE+RIT++LKVGKDKRALKV +RK+    + K  RE
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.385e-19
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            VGLNKGH VTKK   PRPS RKG  S+RV  V+ ++REVAG+APYERR+ ++LKVGKDKRALK+ +RK+    + K  RE
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKRE 85          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.276e-18
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 3
Query:   87 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            GL VGLNKG V+TK++LP RPS RKG+ SKR  FV++++REVAGFAPYERR+ ++++  +DKRA K+ ++++    + K   E
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIE 86          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.332e-18
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 3
Query:   90 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            L VGL KGH VTK E  PRPS RKG  SK   FV++LIREV GFAP+ERR  ++LKV KDKRALK  ++++    + K  R+
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRD 88          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.270e-18
Identity = 42/83 (50.60%), Postives = 61/83 (73.49%), Query Frame = 3
Query:   87 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            GL VGLNKG  +TK++LP RPS RKG  SKR  FV++++REVAGFAPYERR+ ++++  +DKRA K+ ++++    + K   E
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIE 86          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR  ++LKV KDKRALK  +++V    + K  RE
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR  ++LKV KDKRALK  +++V    + K  RE
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88          
The following BLAST results are available for this feature:
BLAST of EY684883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL36_DAUCA6.091e-3777.8960S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL363_ARATH3.957e-2871.4360S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL362_ARATH6.750e-2867.0360S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL361_ARATH1.964e-2770.2460S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_ENTCP4.385e-1961.2560S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36A_SCHPO1.276e-1851.8160S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_IXOSC6.332e-1856.1060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36B_SCHPO8.270e-1850.6060S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_PONAB4.104e-1755.0060S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_HUMAN4.104e-1755.0060S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684883 ID=EY684883; Name=EY684883; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGAGAAGAAGTATATATTCCCGGAAGATTGTAGTAGGAGCT
GTTTGGTAGGTGATGGCTCCAAAGCAGCCAAATACTGGCCTTTTTGTGGG
TCTAAACAAAGGACATGTCGTGACCAAGAAGGAGTTGCCTCCCCGCCCTT
CTGATAGAAAAGGCAAAACTAGTAAGAGAGTCCATTTTGTGAAGAACCTC
ATTAGGGAGGTTGCTGGTTTTGCTCCCTATGAAAGGAGGATTACTGACAT
TCTTAAAGTTGGGAAAGATAAGCGTGCTTTGAAGGTGGAACAAAGAAAGG
TGACGCCCTCACACAAAACCAAGAACAACCGCGAAGGAAATGTCAGAAGC
CTCAACAGCCATGACGTCAAATGCAGAGAGAACACGCACCAACAAACCCA
CCGGTGGGGGGGACGAGGAGGACGCGAACCACCACGGGACCAGGCCACAC
AGACGGGACCACGAAGGAAAACATAGACGCGACGAGAGACAACCGTCAAA
AACCCGCAAACTCATCACCGCACCCCCACCGAACCCCAAGCGCACAAACA
ACCCACGAGAACCAGGCCCACCAAACACAACACCGCGCTCCCCCCCACCG
CCCACAGGCAACACACCCCACGAGCCGCCAGAGCACGGACAAGGAAATAA
AAGAAGAAAACGCAAAAAACAAACCAGAACCGAACACAACCCGGGCGCGA
CACGACCTCACCGAACCCCGAACACCGTACCGGCACCAAGAGCAAACGGC
CCACCCCCAGAGGCGGAACCCCACACACCCAGACCGAAGAACCGCCAAAA
CCCAACAACACACGCGCCCGCCGCGCCAACCCAGCGCCGGCCACCCCCCA
CACACCAAAGAAAAAGACGCCCTAAGACTTGCACCAACACCCAACACCCA
ATC
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