EY684795

Overview
NameEY684795
Unique NameEY684795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684795_ssr34 microsatellite EY684795_ssr34:34..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.014e-81
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAE--REIVRDVKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.014e-81
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE--REIVRDMKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.014e-81
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE--REIVRDMKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.014e-81
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE--REIVRDMKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.325e-81
Identity = 163/221 (73.76%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN P  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY++    E  R   R+ KE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTTAE--REIVRDIKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.325e-81
Identity = 164/221 (74.21%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAE--REIVRDVKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.730e-81
Identity = 163/221 (73.76%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MA+ EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYTFTTSAE--REIVRDMKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.259e-81
Identity = 163/221 (73.76%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH+GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAE--REIVRDVKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.951e-81
Identity = 163/221 (73.76%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAE--REIVRDMKE 216
[Close]
BLAST of EY684795 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.951e-81
Identity = 163/221 (73.76%), Postives = 173/221 (78.28%), Query Frame = 2 
Query:  107 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPC-YVCLLSRLCLSLYASGRTTGYLVLNLEMGPPHRSPL*KSKPFHLPYPNGTLPGRQLTRPPHKLLTVPGYLYLPPPELKRAKKRNAKE 766
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP  YV +  +  LSLYASGRTTG +VL+   G  H  P+ +            L GR LT    K+LT  GY +    E  R   R+ KE
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI--QAVLSLYASGRTTG-IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAE--REIVRDMKE 216
The following BLAST results are available for this feature:
BLAST of EY684795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
ACT1_TOBAC1.014e-8174.21Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_SORBI1.014e-8174.21Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_ORYSJ1.014e-8174.21Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI1.014e-8174.21Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT7_ARATH1.325e-8173.76Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT11_ARATH1.325e-8174.21Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT3_PEA1.730e-8173.76Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT11_SOLTU2.259e-8173.76Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT4_ARATH2.951e-8173.76Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT12_ARATH2.951e-8173.76Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684795 ID=EY684795; Name=EY684795; organism=Citrus sinensis; type=EST; length=878bp
GGTAGCTTAACGCACAGCGCAAAGTCCGTTAGTGAGAGAGAGAATCAGAA
CAGAAACAAAAGGAAGAAAAAAAAATTATTTTTTTTTAGAAATTCGAAGT
TAGAAAATGGCAGATACTGAGGATATTCAGCCTCTTGTTTGTGACAATGG
GACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTG
TGTTCCCCAGCATTGTGGGTCGCCCTCGCCACACTGGAGTTATGGTTGGT
ATGGGTCAGAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAAAGAGG
TATTTTGACTTTGAAATACCCAATCGAGCATGGCATTGTTAGCAACTGGG
ACGATATGGAGAAAATCTGGCATCACACATTTTATAATGAGCTTCGTGTG
GCTCCGGAAGAGCATCCGGTTCTTCTCACTGAGGCTCCCCTTAATCCGAA
GGCCAATCGTGAGAAGATGACACAGATTATGTTTGAGACCTTTAACACCC
CCTGCTATGTATGTTTGCTATCCAGGCTGTGCCTTTCTCTCTATGCTAGC
GGTCGTACAACTGGGTATTTGGTCTTGAATCTGGAAATGGGGCCCCCACA
CAGATCCCCTCTATGAAAAAGTAAGCCCTTCCACCTGCCATACCCCAATG
GAACCTTGCCAGGGCGGCAACTTACCAGACCCCCTCATAAACTACTGACC
GTACCGGGATACCTCTATCTCCCCCCCCCTGAGCTGAAGCGAGCTAAGAA
AAGAAATGCCAAGGAAACGAAGACGAAAAGCGGCGGACCGGGCAGCGACG
CACAAAAAAGGACCCCCTACCCCTACCTCCCCACCCAGAGAACAACACAG
GAACAAGCGCCTGTCCACCAGAGAATAA
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