EY684787

Overview
NameEY684787
Unique NameEY684787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: MRM1_DICDI (Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum GN=mrm1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 73/199 (36.68%), Postives = 109/199 (54.77%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE-----------------------DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSV-----SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 514
            ++  +K  L+     RPHQG++LDASPL ++ I  L+    +E                       D+  LW+ LDE+ DPQN+GAIIR+  FF   GVV+  KNS+P++   SK+S+G+ E   +    ++  FL SS  NGW V+G S+     +   + +N+I   QPTIL+LG+EG GL+P V   C   ++I G
Sbjct:  304 VRSVNKGTLDSFSKGRPHQGIILDASPLTLLNIDFLEKFDINERVNKRMNGGGGGGGGGGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLKPSVLEICNKTIKIVG 502          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: MRM1_SCHPO (rRNA methyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=mrm1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.001e-26
Identity = 78/205 (38.05%), Postives = 109/205 (53.17%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-----------------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP-----------PGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 514
            IK  +K  LN +   RPH G+VL+AS L +  I +L                          S+ ++   L+V +D +TDPQN+GA+IRSAY  GA G++L  K++  LS VVSKASAG+LE+  + +  N M FL +S   GW+V+G   +  A+P N+               +P ILVLGSE  GLR  +   C+H V IPG
Sbjct:   78 IKSVNKEHLNQITACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHNDLNEGKSSSSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFNISHVKNPMVFLRNSVLKGWKVIG---TKPALPDNKDQIYTPHKIKTELMNEPKILVLGSE-KGLRTNILTQCSHYVSIPG 278          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: MRM1_MOUSE (rRNA methyltransferase 1, mitochondrial OS=Mus musculus GN=Mrm1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.493e-25
Identity = 69/175 (39.43%), Postives = 104/175 (59.43%), Query Frame = 2
Query:   17 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGG--------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 508
            +  L+ + G + HQG+ ++ SPL      E    S+ +D   LW+ L+ + DP+NLGA++RSA+F G   V+   +NS PL+ VVSKASAG++E++++    ++  FL + A+ GW V+G         S SSK VP+    E    +PT+LVLGSEG+GL   V  SC  L+ I
Sbjct:  102 RQKLDALCGYQVHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLVVGTVGCPGPEISQSSK-VPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTI 275          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: MRM1_HUMAN (rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.175e-25
Identity = 63/162 (38.89%), Postives = 98/162 (60.49%), Query Frame = 2
Query:   53 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLVRI 508
            HQG+ ++ SPL     +E    S  +D   LW+ LD + DP+N GA++RSA+F G   V+   +NS PL+ VVSK+SAG++E++++   +++  FL + A+ GW V G  G  S++    +EIP          +PT+LVLG+EG+GL   V+ SC  L+ I
Sbjct:  116 HQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTI 277          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y955_SYNY3 (Uncharacterized tRNA/rRNA methyltransferase slr0955 OS=Synechocystis sp. (strain PCC 6803) GN=slr0955 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.425e-22
Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            + E     LN +  N  HQG+    +P    ++ +L   +  +  A + + +D +TDP NLGAIIR+A  FGA G+VL  +  A ++  V K +AG+LE   +    N+ + L +  E+G+ +  G+V+ K   L++    +P  LV+GSEG GL  L ++ C HL+ IP
Sbjct:  171 VDEVDNFRLNQITHNANHQGIAAQVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIY-GTVAGKQTALHQADLREPMGLVIGSEGEGLSLLTQKHCDHLITIP 339          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y1447_MYCGI (Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  +HDL+ +  N  HQG+ L   P       +L   +  +   +L VALD ++DP+NLGAI+RS   FG  GVVL  + SA ++ V  + SAG+     +    N+ + L   A+ G +V+G         ++EI    PTI+V+GSEG GL  LV  +C  +V IP
Sbjct:  118 ILEVQRHDLDRMAANGLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQVVGLDAGGDTT-IDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIP 286          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y574_MYCA1 (Uncharacterized tRNA/rRNA methyltransferase MAV_0574 OS=Mycobacterium avium (strain 104) GN=MAV_0574 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.285e-21
Identity = 60/170 (35.29%), Postives = 92/170 (54.12%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ + GN  HQG+ L   P       +L   +A    A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++    P ++V+GSEG GL  LV ++C  +V IP
Sbjct:  115 ILEVPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSPPALL-VALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLDAGGDTT-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP 282          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y479_MYCPA (Uncharacterized tRNA/rRNA methyltransferase MAP_0479 OS=Mycobacterium paratuberculosis GN=MAP_0479 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.072e-20
Identity = 60/170 (35.29%), Postives = 93/170 (54.71%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ + GN  HQG+ L   P       +L   +A    A L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G       + L+++    P ++V+GSEG GL  LV ++C  +V IP
Sbjct:  115 ILEVPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPALL-VALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLDAGGDTM-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP 282          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y5337_MYCVP (Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_5337 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  +HDL+ +  N  HQG+ L   P       +L   +  +   +L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+     +    N+ + L   A+ G +V+G         +++I    P ++V+GSEG GL  LV  +C  +V IP
Sbjct:  118 ILEVPRHDLDRIAANGMHQGIALQVPPYNYAHPDDLLAEAKSDAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQVVGLDADGDTT-VDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIP 286          
BLAST of EY684787 vs. ExPASy Swiss-Prot
Match: Y5122_MYCSJ (Uncharacterized tRNA/rRNA methyltransferase Mjls_5122 OS=Mycobacterium sp. (strain JLS) GN=Mjls_5122 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = 2
Query:    2 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 511
            I E  + DL+ +  N  HQGL L   P +     +L   +  +   +L VALD ++DP+NLGAI+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L S A+ G +V+G         L+E+    P ++V+GSEG GL  LV  +C  +V IP
Sbjct:  119 ILEVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIP 287          
The following BLAST results are available for this feature:
BLAST of EY684787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MRM1_DICDI1.650e-2936.68Mitochondrial rRNA methyltransferase OS=Dictyostel... [more]
MRM1_SCHPO1.001e-2638.05rRNA methyltransferase, mitochondrial OS=Schizosac... [more]
MRM1_MOUSE5.493e-2539.43rRNA methyltransferase 1, mitochondrial OS=Mus mus... [more]
MRM1_HUMAN7.175e-2538.89rRNA methyltransferase 1, mitochondrial OS=Homo sa... [more]
Y955_SYNY37.425e-2234.12Uncharacterized tRNA/rRNA methyltransferase slr095... [more]
Y1447_MYCGI9.697e-2236.47Uncharacterized tRNA/rRNA methyltransferase Mflv_1... [more]
Y574_MYCA16.285e-2135.29Uncharacterized tRNA/rRNA methyltransferase MAV_05... [more]
Y479_MYCPA1.072e-2035.29Uncharacterized tRNA/rRNA methyltransferase MAP_04... [more]
Y5337_MYCVP1.829e-2033.53Uncharacterized tRNA/rRNA methyltransferase Mvan_5... [more]
Y5122_MYCSJ4.074e-2034.71Uncharacterized tRNA/rRNA methyltransferase Mjls_5... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684787 ID=EY684787; Name=EY684787; organism=Citrus sinensis; type=EST; length=917bp
CATAAAGGAAACCTCAAAGCATGATCTCAATATGGTTGTTGGTAATCGCC
CTCATCAGGGTCTTGTTCTTGACGCATCTCCATTGGAGATGGTCAAAATA
AAAGAATTGGACCCTATTTCGGCTGATGAAGATCAAGCCTCTCTTTGGGT
AGCACTGGATGAGGTGACAGATCCTCAAAATTTGGGGGCCATCATTAGGT
CTGCTTACTTCTTTGGAGCTTCAGGGGTGGTTTTGTGTGCAAAAAATTCA
GCACCATTGAGTGGTGTTGTGAGCAAGGCTAGTGCAGGGTCACTTGAATT
GGTGGAGCTGAGGTACTGTAACAATATGATGCAGTTCTTGGTATCATCAG
CTGAAAATGGCTGGCGAGTCCTTGGCGGTTCAGTTTCTTCAAAAGCAGTT
CCCTTGAATGAGATTCCTCCTGGTCAGCCAACTATTCTAGTTTTGGGCAG
TGAGGGCACAGGATTGAGGCCTTTGGTGGAGAGATCCTGTACACATTTGG
TTAGGATCCCTGGAAACATTCCAGATGATGTAACTGCTGGCAAAATTGAT
GATGTGGAAGCTAATGGAAACCACGGGTCCACACAACCATTACCGCCCAC
TTACAAGATGTGGCGAACTTTGAGGGCACAGCCCCGCGGTGGCGCTGGAG
ACAGACCGCGGAGAATGGAACCCTGGCTGATGCAAACGAAGACACAGTGA
ACGCGAACCCACGCTAGATCAACCACAATCTAATGGGCCACACGCCGCCG
AGATCAAGACAAAGTCAACCACACAGGAATGAACGGCACGTCGCCCGCCG
GGCCCAATCGGCACGCGCTCTCACCTCGAGACTCAGAAATTAGAAGTCAG
GTAGAGGATACGACCGAGAAACACGAGAATACGAACACTAAGGAAGATCG
GGGAAGGCGCGCCCCCA
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