EY684783

Overview
NameEY684783
Unique NameEY684783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5289 contig Csv1_Contig5289:629..1519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 3.593e-74
Identity = 131/163 (80.37%), Postives = 149/163 (91.41%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVYPNP 489
            P ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ GG EGPDR+FVGGLPYYFTE  I+EL+E+FG L GF+LVKDR+TGNSKGY FCVY +P
Sbjct:  264 PTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDP 426          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 5.188e-73
Identity = 129/160 (80.62%), Postives = 146/160 (91.25%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAM+LDGIIFEG  V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL  GA GG EGPDR+FVGGLPYYFTE+ ++EL+E+FG L GFDLVKDR+TGNSKGY FCVY
Sbjct:  248 PTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.510e-72
Identity = 127/160 (79.38%), Postives = 145/160 (90.62%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            P ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE  ++EL+E+FG L GFDLVKDR+TGNSKGY FCVY
Sbjct:  223 PTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 382          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.392e-72
Identity = 129/160 (80.62%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            P ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+IFEG  V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG   G+ GG EGPDR+FVGGLPYYFTE+ I+EL+E+FG L GFDLVKDR+TGNSKGY FCVY
Sbjct:  230 PTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVY 389          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.669e-71
Identity = 126/160 (78.75%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            P ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QPS NLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE  ++EL+E+FG L GFDLVKDR+TGNSKGY FCVY
Sbjct:  216 PSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 375          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.180e-71
Identity = 127/158 (80.38%), Postives = 144/158 (91.14%), Query Frame = 1
Query:    7 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR+VEEASNAMALDGIIFEG   +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG EGPDR+FVGGLPYYFTE  I+EL+E+FG L GFDLVKDR+TGNSKGY FCVY
Sbjct:  250 ANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 407          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 2.180e-71
Identity = 124/160 (77.50%), Postives = 143/160 (89.38%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            P ANE  +A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL  G+ GG EGPDR+FVGGLPYYFTE  ++EL+E+FG L GFDLVKDR+TGNSKGY FCVY
Sbjct:  247 PTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 406          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.025e-68
Identity = 121/160 (75.62%), Postives = 139/160 (86.88%), Query Frame = 1
Query:    1 PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            P+ANEQ +A FF+QVM AIGGN+   G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG  V+VRRPTDYNP+ AAALGP QP+PNLNLAAVGL  GA GG EGPDR+FVGGLPYYFTE  ++EL+E FG L GFD+VKD++TGNSKGY FC+Y
Sbjct:  281 PIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLY 440          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.747e-28
Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            E+A+  FF+  M  +GG +  PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P       PG  S N ++   G+ S  +   +   ++F+GGLP Y  +  +KEL+ +FG L  F+LVKD  TG SKGY FC Y
Sbjct:  162 EEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307          
BLAST of EY684783 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 126.716 bits (317), Expect = 1.747e-28
Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETHIKELVEAFGTLHGFDLVKDRDTGNSKGYGFCVY 480
            E+A+  FF+  M  +GG +  PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P       PG  S N ++   G+ S  +   +   ++F+GGLP Y  +  +KEL+ +FG L  F+LVKD  TG SKGY FC Y
Sbjct:  162 EEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307          
The following BLAST results are available for this feature:
BLAST of EY684783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
U2A2B_ARATH3.593e-7480.37Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2A_ARATH5.188e-7380.63Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_ORYSJ1.510e-7279.38Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_NICPL4.392e-7280.63Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_WHEAT1.669e-7178.75Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2B_NICPL2.180e-7180.38Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2A_ORYSJ2.180e-7177.50Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT5.025e-6875.63Splicing factor U2af large subunit A OS=Triticum a... [more]
U2AF2_MOUSE1.747e-2843.59Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]
U2AF2_HUMAN1.747e-2843.59Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-F02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684783 ID=EY684783; Name=EY684783; organism=Citrus sinensis; type=EST; length=891bp
CCTTTGGCTAATGAACAGGCAATTGCTACATTCTTTAGCCAAGTTATGAC
TGCTATTGGAGGAAATTCTGCTGGTCCTGGTGATGCAGTAGTGAATGTTT
ACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAA
GAAGCGAGTAATGCAATGGCATTAGATGGGATTATATTTGAGGGGGTTGC
TGTGAGGGTAAGAAGACCTACGGATTACAACCCTACATTAGCTGCAGCAC
TTGGTCCAGGCCAACCAAGTCCGAATCTTAACTTGGCAGCTGTTGGACTT
GCATCAGGTGCAATTGGTGGAGCAGAGGGACCTGATCGGGTCTTTGTGGG
TGGATTACCATACTACTTCACTGAAACTCACATAAAAGAGTTGGTCGAGG
CTTTTGGGACTCTTCATGGTTTTGACCTCGTTAAGGATAGAGACACGGGG
AACTCTAAAGGATATGGTTTCTGTGTCTATCCAAATCCACCGGAGGAAAA
ACCTAAGCATGTGCAGACTCAAGATAGGTTGAACATGTAAGGAACAGATT
CACCTCGATCCACGAACCTCCCGCCCGCCAGTCCGAGGACCACAAACTGA
AACCACACGCACCCCGTAACACAGACTGCGATGAGCTATACAGAATCAGG
AACACAGCAGTAGCGAAATAGGCCGACCCAACCCGGAGACCGGCGGGAGA
AGGAGCGCGGGAACGGAACGAGGCCACCGACCACCGCACGACCGACAGCC
AACACAATTGTGCCCGCCGACACACGGTCATAGATCCACGCCTCCCTGGG
CACCCGCGTCCCGAGACGAAAGGGCACAAGCCGCCCAGCCCGCCCCGCCC
AAGGACAGACGGAGACGGACCAACAGCACGCCCAAGACGCG
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