EY684781

Overview
NameEY684781
Unique NameEY684781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length986
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684781_ssr899 microsatellite EY684781_ssr899:899..908. BLAST: Citrus ESTs to SwissProt
EY684781_ssr475 microsatellite EY684781_ssr475:475..489. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_PSEAE (Beta-hexosaminidase OS=Pseudomonas aeruginosa GN=nagZ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.485e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAHVI 195
            GKHFPGHGWAEADSHVAIP D RSLE+IR +DLVPFARL+ QL A+MPAHVI
Sbjct:  160 GKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVI 211          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_PSEAB (Beta-hexosaminidase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nagZ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.485e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAHVI 195
            GKHFPGHGWAEADSHVAIP D RSLE+IR +DLVPFARL+ QL A+MPAHVI
Sbjct:  160 GKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVI 211          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_PSEA8 (Beta-hexosaminidase OS=Pseudomonas aeruginosa (strain LESB58) GN=nagZ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.485e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAHVI 195
            GKHFPGHGWAEADSHVAIP D RSLE+IR +DLVPFARL+ QL A+MPAHVI
Sbjct:  160 GKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVI 211          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_IDILO (Beta-hexosaminidase OS=Idiomarina loihiensis GN=nagZ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.850e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQLAAVMPAHVI 195
            GKHFPGHG  +ADSH+AIP D+R+LEQIRA+DL PF  L ++L  +MPAHVI
Sbjct:  162 GKHFPGHGSVQADSHIAIPEDDRTLEQIRAHDLKPFLSLIQKLDGIMPAHVI 213          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_AZOSE (Beta-hexosaminidase OS=Azoarcus sp. (strain EbN1) GN=nagZ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.195e-12
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -3
Query:   31 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFA-RLSKQLAAVMPAHVIIHR 195
            GKHFPGHG+AEADSHV IP DER  + I   D+ P+  RL +QLA VMPAHVI  R
Sbjct:  179 GKHFPGHGYAEADSHVEIPVDEREFDAIWTEDIAPYRHRLGRQLAGVMPAHVIYPR 234          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_NEIG2 (Beta-hexosaminidase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=nagZ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.011e-11
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKHFPGHG+ E DSH+ +P D RSL+++ A DL PF  +S++ +AAVMPAHV+
Sbjct:  173 GKHFPGHGFVEGDSHLVLPEDGRSLDELEAADLAPFRIMSREGMAAVMPAHVV 225          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_NEIG1 (Beta-hexosaminidase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nagZ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.011e-11
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKHFPGHG+ E DSH+ +P D RSL+++ A DL PF  +S++ +AAVMPAHV+
Sbjct:  173 GKHFPGHGFVEGDSHLVLPEDGRSLDELEAADLAPFRIMSREGMAAVMPAHVV 225          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_NEIMF (Beta-hexosaminidase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nagZ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.321e-11
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKHFPGHG+ E DSH+ +P D RSL ++ A DL PF  +S++ +AAVMPAHV+
Sbjct:  173 GKHFPGHGFVEGDSHLVLPEDRRSLSELEAADLAPFHIMSREGMAAVMPAHVV 225          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_NEIMA (Beta-hexosaminidase OS=Neisseria meningitidis serogroup A GN=nagZ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.725e-11
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKHFPGHG+ E DSH+ +P D RSL ++ A DL PF  +S++ +AAVMPAHV+
Sbjct:  173 GKHFPGHGFVEGDSHLVLPEDGRSLSELEAADLAPFRIMSREGMAAVMPAHVV 225          
BLAST of EY684781 vs. ExPASy Swiss-Prot
Match: NAGZ_NEIM0 (Beta-hexosaminidase OS=Neisseria meningitidis serogroup C (strain 053442) GN=nagZ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.725e-11
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = -3
Query:   40 GKHFPGHGWAEADSHVAIPNDERSLEQIRANDLVPFARLSKQ-LAAVMPAHVI 195
            GKHFPGHG+ E DSH+ +P D RSL ++ A DL PF  +S++ +AAVMPAHV+
Sbjct:  173 GKHFPGHGFVEGDSHLVLPEDGRSLSELEAADLAPFRIMSREGMAAVMPAHVV 225          
The following BLAST results are available for this feature:
BLAST of EY684781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NAGZ_PSEAE2.485e-1882.69Beta-hexosaminidase OS=Pseudomonas aeruginosa GN=n... [more]
NAGZ_PSEAB2.485e-1882.69Beta-hexosaminidase OS=Pseudomonas aeruginosa (str... [more]
NAGZ_PSEA82.485e-1882.69Beta-hexosaminidase OS=Pseudomonas aeruginosa (str... [more]
NAGZ_IDILO4.850e-1467.31Beta-hexosaminidase OS=Idiomarina loihiensis GN=na... [more]
NAGZ_AZOSE1.195e-1264.29Beta-hexosaminidase OS=Azoarcus sp. (strain EbN1) ... [more]
NAGZ_NEIG21.011e-1158.49Beta-hexosaminidase OS=Neisseria gonorrhoeae (stra... [more]
NAGZ_NEIG11.011e-1158.49Beta-hexosaminidase OS=Neisseria gonorrhoeae (stra... [more]
NAGZ_NEIMF1.321e-1158.49Beta-hexosaminidase OS=Neisseria meningitidis sero... [more]
NAGZ_NEIMA1.725e-1158.49Beta-hexosaminidase OS=Neisseria meningitidis sero... [more]
NAGZ_NEIM01.725e-1158.49Beta-hexosaminidase OS=Neisseria meningitidis sero... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-E12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684781 ID=EY684781; Name=EY684781; organism=Citrus sinensis; type=EST; length=986bp
GCCGCAGTACCGGTCGGATTCCCGGGTCGACCTGTGGATAATCACGTGGG
CCGGCATGACGGCCGCCAACTGCTTGCTCAGGCGTGCAAAAGGCACCAGG
TCATTGGCGCGAATCTGTTCCAGGCTGCGCTCATCATTGGGAATCGCGAC
GTGGGAATCGGCTTCGGCCCAGCCGTGGCCGGGGAAGTGTTTGCCGGNAG
CGGCCGTGCGGGCGCTGGTCGGTCCGCGCCCTCCCCGCCCCCGCCCGCCC
CGCGGCGCCCTCGGCCGTCGCCTTCGCNCGCCCGCCCCCCGGCCGGGCGC
GGGCCCCTGGCGCCGCCCGCGCGCGCCCCCGCCGCGCGGGCGGCGCGCCG
CCGGCCGCTCGCGCGGCCCGCGGCGGCGCGGGCCGCGGCCGGCGGCGGCT
GGCCGCCCCCGCCGCGCCCCCCCCCCCGGCGCCCCCCCCCCCCCGGGGGG
GGGGGGGCGGGCCCCCCGCCCCTCCGCCGCGCCGCGCCGCCCCTCCCCCC
CCGGGGCCCGGGGCCCGTGCGCCCCGGCGCTGCGGGCGCGGCGCGCGCCC
CCCCCGGCGGCGCCGCCGCCCCGGCCCGCCTCCGCGCCCGCGCGGCCGCC
CCGCCCCGCGCCCGCGGGGCCCTCGCGCGCTGCGGCGCGTGCTGCCGCCG
GCCCCCGCGCGCCGGCTCCGCGCGGCCCCCCCGCGGCCCCGGCCGCGGGC
CGCCGCGCCCCCCGGCGCGCGCCGCGCGCCGGCCGCCCGCGCGGCGCGCC
GNCGCGCGGCGGCCGGCCTCGCGCGCGGCCGGCCCGGGGCGCGGGCGCCN
GCCGCCCGCGCGTCGGCCGCCGGCGCGGCGGGCGGGGGGCGCGGGGCGCC
CCCTTCCGCGCCGCGCGCGCTCGCGCCCNCCCCCGCGGCCCCCCCCGCCG
CGCGCGCGTGGCGGGCCGCCCGGGGCGCGCCCGCGGCGGCGGCCCGGCCG
GCGCCGGTGCGCGCGGCCGCGCCGCGGGCGGGCGCC
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