EY684780

Overview
NameEY684780
Unique NameEY684780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684780_ssr149 microsatellite EY684780_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY684780 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.559e-13
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = 2 
Query:  254 PQCGSSNVFESTNEGNAG--NYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNS---GVGGITERISGNVVDEVWVAQREAALTKFRQKKGKKRCFGEK 559
            PQCGSSNV+  T EGN    NY                      +NAG  N+ SDNGA  N    G G  +   SGN+ DE  ++QREAALTKFRQK+ K+RCF +K
Sbjct:  583 PQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKR-KERCFRKK 688
The following BLAST results are available for this feature:
BLAST of EY684780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APRR7_ARATH2.559e-1344.86Two-component response regulator-like APRR7 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684780 ID=EY684780; Name=EY684780; organism=Citrus sinensis; type=EST; length=863bp
CAACAATGATGGTGATGTTGGAAATTATGATGTGAACGGCCGTATCTGTT
CATCTCAACCGCTTTTACCTGAAAAGACGGATGATATGGGACTTAACTCA
GGTCAATCACAATTGAGAGGGTCACACCATTCAGTTCAAGTGGAGAATCA
CCACCACCACTACCACCGTCATTATCATCAGCACGACCACAACATGCAGC
AGTCACCACAGGACTGTGATGATGTCTCGTTCAAGAATATGGTAGCTGCA
GCTCCACAGTGTGGGTCATCAAATGTATTTGAGAGTACCAATGAAGGTAA
TGCTGGAAATTATAGTGTGAATGGGAGTGCCTCGGGGAGTAACCACGGCA
GCAATGGACAAAATGGAAGCAGCACTGCCTTGAATGCTGGAGTAACAAAT
TTGGACAGTGACAATGGGGCAGCAGGAAATAGTGGAGTTGGTGGCATAAC
TGAAAGAATCAGTGGAAATGTGGTAGATGAAGTTTGGGTTGCTCAGAGAG
AAGCTGCCTTGACTAAATTTCGCCAGAAAAAAGGAAAAAAAAGGTGTTTC
GGGGAAAAGGGATCAATAATAAAAAGCCGGAAAAAATTGACCAAAAAAAA
GGGCCACGTGTCATGGGGAACGCTTGATAGACCGCACCCCCCACCAGCAC
ATATCAGCAAAAGATGCCAACAGGAACGGACCCACCCCGCGAAAACACTC
CCACGACCATCCTCGAAAAACCACTGGCGACAACCAGAGACAACCAGTGA
ACACGAAAGAAAGCACCGGAAAAAATACAGCGAGACAACAACACTTCACG
AACACACTAACCAGCTAGCAGCGGACAAAGGGCGGGCGGCACCCGCTCGC
CCCAAAACCCCAC
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