EY684779

Overview
NameEY684779
Unique NameEY684779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7250 contig Csv1_Contig7250:554..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB2_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.997e-53
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 300
            QSKKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct:  179 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 277          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB1_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.997e-53
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 300
            QSKKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct:  180 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RICBR (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            QS KDR KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A RWI+DSRD++T ERLEA++D FKLYRCHTI+NC + CPKGLNP K I  IK L  +R
Sbjct:  157 QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAISEIKGLIAER 258          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RICCN (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia conorii GN=sdhB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.822e-40
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            QS KDR KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A RWI+DSRD+ T ERLEA++D FKLYRCHTI+NC + CPKGLNP K I  IK L  +R
Sbjct:  157 QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGERLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGKIKSLIAER 258          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RICTY (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi GN=sdhB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.773e-39
Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            QS +DR KLDG+YECILCACCSTSCPSYWW S+ YLGPA LL A RWI+DSRD+ T  RLEA++D FKLYRCHTI+NC + CPKGLNP K I  +K L  +R
Sbjct:  157 QSIQDREKLDGLYECILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGRVKSLIAER 258          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_RICPR (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii GN=sdhB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.773e-39
Identity = 71/102 (69.61%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            QS KDR KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A RWI+DSRD+ T  RLEA++D FKLYRCHTI+NC + CPKGLNP K I  +K L  +R
Sbjct:  157 QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGRVKNLIAER 258          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_XENTR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.928e-39
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct:  176 QSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDYTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 273          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_CHICK (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.928e-39
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct:  182 QSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 279          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_PARDE (Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus denitrificans GN=sdhB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 309
            QS +DR KLDG+YEC++CA CST+CPSYWW  + YLGPAALLHA RWI DSRDE T ERL++++D FKLYRCHTI+NC   CPKGLNP K I +IK + + R
Sbjct:  156 QSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLHAYRWIIDSRDEATGERLDSLEDPFKLYRCHTIMNCTNTCPKGLNPAKAIASIKHMMVDR 257          
BLAST of EY684779 vs. ExPASy Swiss-Prot
Match: DHSB_XENLA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.098e-38
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    4 QSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 297
            QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD++T+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct:  174 QSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 271          
The following BLAST results are available for this feature:
BLAST of EY684779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHSB2_ARATH5.997e-5394.95Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB1_ARATH5.997e-5394.95Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RICBR2.001e-4071.57Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_RICCN5.822e-4071.57Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_RICTY3.773e-3969.61Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_RICPR3.773e-3969.61Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_XENTR4.928e-3969.39Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_CHICK4.928e-3969.39Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_PARDE8.406e-3966.67Succinate dehydrogenase iron-sulfur subunit OS=Par... [more]
DHSB_XENLA1.098e-3868.37Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-E10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684779 ID=EY684779; Name=EY684779; organism=Citrus sinensis; type=EST; length=895bp
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTAATAGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTACCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CCAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAG
CTAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTG
TGGATTTGACCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAAT
TTGCACATTGATTGTATTATTCATCCCATTTGTACTTAGATTGGGATCAA
ATTTGAAGCTTCTTGTCTTTTTTATGCCTAATAATAATTTATAAAACTTA
TTGGATCCGTACTTTCTTCCATCAGGTGAAAAACAAATAAACATTACTGT
TTTTGACCCAGGATACCAAATTAACTGGCCAATGTGGAAAAACCACATTG
GCTATTTAACCGGACGCCCGACACGCACCAACCACCCCGCCACCGCGCAC
CCCAACCTCTACCAACCCCACTCCCACCCCACGTCGAAACTCCCTTCCCC
GAAAGCCACGGTCGCGCCCCCCCCCGATAGCGCCGAAAGCCCACATCGCC
ACGACGACCCCGCCCGCACTCGACAAATCACCCAACCTAGCCAAGCAACA
GAACCCCACACTGCAGGACAAGCAACCGGGCCCCACCACACACCGCCCCC
CCCTATCAAACGCAATGGCAGGAGACCAAGAGCCACAGCAGCCCC
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