EY684686

Overview
NameEY684686
Unique NameEY684686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684686 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.707e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query:  154 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 444
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of EY684686 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.745e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  154 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 441
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of EY684686 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.967e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  154 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 441
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of EY684686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.707e-48100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.745e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.967e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-C07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684686 ID=EY684686; Name=EY684686; organism=Citrus sinensis; type=EST; length=811bp
CCACGCGTCCGCGGACGCGTGGGAGAGCGAGCCGCTAGCTTTTGCCTATA
GCTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAA
ACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAA
ACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGC
TGATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCAC
CCTTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGG
CCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCC
CATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAG
CAGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGA
GTGGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTT
TTAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGC
TGTTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCA
TGATTTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGTNNANCN
NNNANACNAANAACAAAAACAAAAAAAANAAAAAAAAAAAAAAGGGGGCG
GGCGCTCTAAAGGAACCAAAGTTACGTACCCGGGCATGGAAACGCCAAAA
CTCTTTCATAATGGCACCCAAATTCAATTCCCTGGGCCGGCGTTTTAAAA
CGCCCGGAATG
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