EY684666

Overview
NameEY684666
Unique NameEY684666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684666_ssr622 microsatellite EY684666_ssr622:622..631. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr841 microsatellite EY684666_ssr841:841..850. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr859 microsatellite EY684666_ssr859:859..868. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684666_ssr576 microsatellite EY684666_ssr576:576..587. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 182.185 bits (461), Expect = 3.349e-45
Identity = 89/129 (68.99%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE                  L S   V A +LSE+    FY+NW +   K F
Sbjct:    2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 177.563 bits (449), Expect = 8.250e-44
Identity = 91/154 (59.09%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGFKA*AR-------GQGREAWLKKNRK 453
            SHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIE                  L S + V A +LSE+    FY+NW +   K F   A+        +G +A L+K +K
Sbjct:    2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKK 155          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.191e-42
Identity = 84/129 (65.12%), Postives = 95/129 (73.64%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIE                  L S + V A +LSE+    FY+NW +   K F
Sbjct:    2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.727e-37
Identity = 78/129 (60.47%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIE                  L S   V A +LSE+    FY+NW +   K F
Sbjct:    2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.479e-37
Identity = 77/129 (59.69%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IE                  L S   V A +LSE+    FY+NW +   K F
Sbjct:    2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 9.768e-37
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+E                  L +   V A ++S++    FY+NW +   K F
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.768e-37
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+E                  L +   V A ++S++    FY+NW +   K F
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.331e-36
Identity = 73/129 (56.59%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+E                  L +   V A ++S++    FY+NW +   K F
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.269e-36
Identity = 73/129 (56.59%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+E                  L +   V A ++S++    FY+NW +   K F
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAF 130          
BLAST of EY684666 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-35
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   13 SHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIEXXXXXXXXXXXXXXXXXXLHSTDRVSAPNLSEQATTTFYQNWGRPNNKGF 399
            SHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+E                  L +   + A ++S++    FY+NW +   K F
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAF 130          
The following BLAST results are available for this feature:
BLAST of EY684666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL32_ARATH3.349e-4568.9960S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH8.250e-4459.0960S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ1.191e-4265.1260S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL3B_SCHPO5.727e-3760.4760S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO7.479e-3759.6960S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_RAT9.768e-3757.3660S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN9.768e-3757.3660S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_MACFA6.331e-3656.5960S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_MOUSE8.269e-3656.5960S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN1.080e-3555.8160S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-H12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684666 ID=EY684666; Name=EY684666; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCT
TGGATTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGG
CTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTG
GGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGG
ATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAA
CCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCCA
GGACTTCACTCCACTGACAGAGTATCGGCCCCGAACCTTAGTGAGCAGGC
GACAACAACGTTCTACCAAAACTGGGGCAGACCCAATAACAAAGGATTCA
AAGCATAAGCCAGAGGACAAGGCAGAGAAGCATGGCTAAAGAAGAATCGA
AAATCGCCTCAAGCCCGAACCCGCACGCCCCACCCACCCGCCACCGCCCC
CACCACCCACCCCACCCCCACGCTCAACCCCCCCCACTCCCACCCCACTA
CCCACCCCCGCCCCCCCCCCCCCCGCCCACCCACCCACACCCACAACCAC
CCACCCCCAAGAAAAAGCCGCCGCGCGCGCGGGCCGGGAGGACGCGGCGC
GCCCCACTAGGACGGCCCCCACGCTCCCCGCGCGGCAGCACCCACGCCCC
AGCCAACGACACGACCGCGCCCGTCCACACCCCACCCCCCAGCCCATAGA
GGGCACCACTTCACCCGACGCCCACCCACCATCCCCACCACCGGCCCCCG
CACCCACGCGGCCACGAACGCTAGGCCTGCGGGCCAGTACCACACACACA
CCACCCAAACACACACACC
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