EY684601

Overview
NameEY684601
Unique NameEY684601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684601_ssr78 microsatellite EY684601_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.941e-16
Identity = 64/164 (39.02%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFMQEMVSMMNNVKDEG--------DSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS--RC 548
            YY ILG+ KDAS  DI+  Y KLA+++HPDR+ K+PG    A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED     DF GF           +  G        D   DL  TF E   G+  D +   T+    R +T  G  AK GTS  RC
Sbjct:    7 YYEILGLPKDASVEDIKKTYRKLALQYHPDRN-KDPG----AEDKFKEISEAYAVLSDTEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYITFEEAAFGVRKDIDIPRTE----RCSTCSGTGAKPGTSPKRC 161          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.066e-16
Identity = 63/164 (38.41%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFMQEMVSMMNNVKDEG--------DSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS--RC 548
            YY ILG+ KD+S  DI+  Y KLA+++HPDR+ K PG    A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED     DF GF           +  G        D   DL  TF E   G+  D +   T+    R +T  G  AK GTS  RC
Sbjct:    7 YYEILGLSKDSSVEDIKKTYRKLALQYHPDRN-KEPG----AEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYVTFEEAAFGVRKDIDIPRTE----RCSTCSGTGAKPGTSPKRC 161          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSF 461
            YY +L + ++ASF +I+ AY KLA+K+HPDR+  NP    EA+ +F+ I EAY VLSDE KR++YD   Y     E++ F GF Q+             SF+D+   F E V G +F
Sbjct:    6 YYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNP----EAEEKFKLINEAYQVLSDEEKRALYDQ--YGKAGLENQGFSGFNQK-------------SFDDIM-DFFESVFGETF 102          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNAJ_THET2 (Chaperone protein dnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-FMQEM 371
            YYAILG+ ++AS  +I+ AY +LA+K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F QE+
Sbjct:    4 YYAILGVSREASQEEIKKAYRRLALKYHPDR---NPG-DKEAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLFFQEV 87          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNAJ1_THET8 (Chaperone protein dnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-FMQEM 371
            YYAILG+ ++AS  +I+ AY +LA+K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F QE+
Sbjct:    4 YYAILGVSREASQEEIKKAYRRLALKYHPDR---NPG-DKEAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLFFQEV 87          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 308
            YY +LG++++AS  DI+ AY KLA+KWHPD   KNP    EA+RRF+++ EAY VLSD  KR +YD
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 52/126 (41.27%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDP 479
            YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD    + L               S  ++  + G +F   ED+ R F    D  SFDF  DP
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLNGGGGG--------GSHFDSPFEFGFTFRNPEDVFREFFGGRDPFSFDFFEDP 118          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 308
            YY +LG++++AS  DI+ AY +LA+KWHPD   KNP    EA+RRF+++ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNJB6_RAT (DnaJ homolog subfamily B member 6 OS=Rattus norvegicus GN=Dnajb6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDPTD 485
            YY +LG+++ AS  DI+ AY K A+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD       +   E   G      S  ++  + G +F   +D+ R F    D  SFDF  DP D
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD-------KYGKEGLNGGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFD 121          
BLAST of EY684601 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  111 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS 542
            YY +LG++K AS  DI+ AY KLA+KWHPD   KNP    EA+++F+Q+ EAY VLSD  KR +YD    + L               S  +N  + G +F   +D+ R F    D  SFDF  DP +         +G  ++ G S
Sbjct:    4 YYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSDAKKRDIYDRFGKEGLINGGGG--------GSHHDNPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDFFGGRRGPRGSRSRAGGS 139          
The following BLAST results are available for this feature:
BLAST of EY684601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DNAJ_METAC6.941e-1639.02Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNAJ_METMA9.066e-1638.41Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNAJ_NITSB4.499e-1541.88Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_THET25.876e-1550.00Chaperone protein dnaJ OS=Thermus thermophilus (st... [more]
DNAJ1_THET85.876e-1550.00Chaperone protein dnaJ 1 OS=Thermus thermophilus (... [more]
DNJB6_XENTR1.002e-1456.06DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNJB6_BOVIN1.002e-1441.27DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJ6A_XENLA1.002e-1454.55DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNJB6_RAT1.309e-1440.63DnaJ homolog subfamily B member 6 OS=Rattus norveg... [more]
DNJB6_CHICK1.710e-1437.41DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-B02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684601 ID=EY684601; Name=EY684601; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGATGATTTTATCTTGACAGCATATTACATCCTTATTGCTG
TTTTCTTTTTTGGTTGCTGTGATGGATGGAGGAGGAGGATCCAACGGCGG
ATCTTTGAGCTACTACGCGATTCTTGGGATTCGCAAGGACGCCTCCTTCT
CTGACATTCGCTCCGCTTATCACAAGCTCGCCATGAAATGGCATCCGGAT
AGGAGTGCGAAGAACCCGGGAGTGGCCGGGGAAGCCAAACGCCGGTTTCA
GCAAATTCAAGAAGCTTACTCCGTCCTCTCGGATGAGAACAAGAGGTCAA
TGTACGATGCTGGACTTTATGATCCCCTTGAGGAAGAAGATGAGGACTTC
TATGGTTTTATGCAAGAGATGGTCTCCATGATGAATAATGTTAAAGACGA
GGGGGACAGTTTTGAGGACCTCCAAAGGACGTTCGTGGAAATGGTGGATG
GGATGAGCTTCGACTTTAATTATGATCCTACGGATGCGCAAAAAGCACGT
GTCAACACATCAAAGGGTAAAGCGGCCAAGCGCGGTACTTCTCGTTGCTG
ACAATCGCTCTGGATCATCTCTGATCATTCCAGCTAATGATGATGGTGTT
TTATCATTCCCCCCATTTTGGTCTAATCTTCGAATTAATCCCCCTTGTGG
GGGTGGGGAAACTTCAGAAAATTTTTGTTTTGTTTCGCATCCCGGGGGAG
GTCACAGTTGGGGCCGGGGTCGTTTTCTTGATGAATAAGGGCCCCGTTTG
GGGGAATGGGGGGGCGGGGCACGGCGACGTGGGGGCGCGCGGGGGGGGGG
CGCTCCAGGAGGACCCAAGCTTAGGACGGGCCCGCCGGGGCCGGGC
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