EY684592

Overview
NameEY684592
Unique NameEY684592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8802 contig Csv1_Contig8802:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 53/84 (63.10%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 RVRTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKKGCCST 255
            R  +E+DG +L+EKEGLSFLETSALEATN+EKAFQTILTEIYH                  PGQGTTINV D S + KKGCCST
Sbjct:  133 RAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 52/84 (61.90%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    4 RVRTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKKGCCST 255
            R  +EEDG +LAEKEGLSFLETSALEA N+EKAFQTILTEIYH                  PGQGTTINV DAS + ++ CCST
Sbjct:  133 RAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYH--IISKKALAAQEASSNLPGQGTTINVADASANQRRSCCST 214          
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    4 RVRTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKKGCCST 255
            R  +E+D  +L +KEGLSFLETSALEA NV+KAFQTILT+IYH                  PGQGTTINV+D S +VK+GCCST
Sbjct:  133 RAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCCST 216          
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 52/81 (64.20%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   16 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH-XXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKKGCCST 255
            EEDG SLAEKEGLSFLETSALEATNVEKAFQTIL EIYH                   PGQGTTINV+D S   K+ CCS+
Sbjct:  137 EEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217          
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    4 RVRTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH-XXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKKGCCS 252
            R  +E++G +LAEKEGL FLETSA+EA NVE+AFQTI+TE+Y                    P QG TI+++ A+ + K+ CCS
Sbjct:  133 RAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRACCS 216          
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   19 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKK-GCCST 255
            EDG S AE+E L F+ETSALEATNVE AF  +LT+IY                   P +G TINV + S  +K+ GCCST
Sbjct:  139 EDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218          
BLAST of EY684592 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 39/79 (49.37%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   19 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTINVN-DASPSVKKGCCS 252
            EDG + AEKE L F+ETSALEATNVE AF  +LT+IY                   P QG TINVN D+S   +  CCS
Sbjct:  139 EDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCS 217          
The following BLAST results are available for this feature:
BLAST of EY684592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RB11C_LOTJA1.248e-2163.10Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU1.168e-1961.90Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11A_TOBAC1.526e-1958.33Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH3.399e-1964.20Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RGP2_ORYSJ6.208e-1346.43Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11D_LOTJA5.255e-1248.75Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA3.406e-1149.37Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-A04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684592 ID=EY684592; Name=EY684592; organism=Citrus sinensis; type=EST; length=771bp
CCACGCGTCCGTACCGAGGAGGATGGCCATTCTTTGGCTGAGAAGGAAGG
TCTCTCATTTCTTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGG
CATTCCAGACCATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCA
TTAGCAGCCCAACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAAC
CACTATTAATGTTAATGATGCATCACCAAGTGTGAAGAAAGGCTGCTGTT
CTACCTAAGATGATAGAGTTACTTGAGGAAGAAAACAGATGCAATACCGG
CCGACATTTTTCTTTTTGTTTCTTTTTTTTTTTCTTTTTCTTTCATTTTC
CATTTCTTTTAATCTTTGGCTAAGAGAGAGACATGTAGAATACTTTTCTT
TTACTTCGTTGAGTTGTGATAAGGAAGCTTGTGAAATTTAAATAGGTGAT
TCCTCCTTTCTTTTGCCCCTTTTCTCAACTCAGCTGCCTAGAAAAGTAAT
ATTGTTCAATGCTGGAATTTGGCTAGGAAATTGGAAGCTTATATTTAACT
TTTGGAGAAGTAGGGGGGCAGAAGAAGAGGCATTGTAAGTTTTTGTGTTG
CTGTTTGGTTTTTTGTTCCTTTTTTGTTCNTTCGGGTACTTTCTAACCTG
TAATAGATGTATCACTATTTTAAGATTACTTCTCTATCAATTCTTCCTTG
AGTTTGGAAAAAAAAAAAAAAAAAAAAGGGCGGCCGGCTCCTAAAGAACC
AAGCTTAACAACGCGGGGCAG
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