EY684576

Overview
NameEY684576
Unique NameEY684576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4640 contig Csv1_Contig4640:504..1402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684576 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 370.548 bits (950), Expect = 7.024e-102
Identity = 170/232 (73.28%), Postives = 199/232 (85.78%), Query Frame = 1
Query:   19 EDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTVGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCNEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQNHEHP 714
            EDP+EIPTIKLN+++F  TL+ +M+ N+ELQEGDMSKALVAL     SIP PKLKN+SRLRTEHQVYELPDSH LL GM+KREPDDP  YLLAIWTPGETANS QPPE +C  +  GKMC ++TC  CNS+RE+  Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+Q    P
Sbjct: 1737 EDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAP 1968          
BLAST of EY684576 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.951e-100
Identity = 172/234 (73.50%), Postives = 196/234 (83.76%), Query Frame = 1
Query:   13 FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTVGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCNEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQNHEHP 714
            F EDPEEIPTI+LNM  FT  L+  M+ N ELQ+G+MS ALVALT   AS+P PKLKN+S+LRTEH+VYELPD HPLL  +EKREPDDP  YLLAIWTPGETA+SIQP  S C  Q +G +C+E+TCFSCNS++E+  QIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADH SSL PINVPRE +W LPRRTVYFGTS+P+IFKGL+TE IQ CFW+GYVCVRGFD+    P
Sbjct: 1138 FFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGP 1371          
BLAST of EY684576 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.442e-62
Identity = 123/219 (56.16%), Postives = 149/219 (68.04%), Query Frame = 1
Query:   19 EDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTVGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQE-HGKMCNEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRG 672
            E+ + IPTI LN +  T        + +  +E   S  LV L+  AA+IP  KLK   +LRTEH V+ELPD H +L G E+RE +D   YLLAIWTPGET NSIQPP+ RC+  E +  +CNE  CF CN  RE E Q VRGTILIPCRTAMRG FPLNGTYFQ NEVFADHDSS+ PI+VP E +W+L RR  Y G+S+ SI KGL+ E I++ F  G
Sbjct: 1061 ENKDVIPTIILNKEAGTS------HDLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1273          
BLAST of EY684576 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.533e-56
Identity = 114/243 (46.91%), Postives = 154/243 (63.37%), Query Frame = 1
Query:    1 PRVRFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD--MSKALVALTVGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCNEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQNHEHP 714
            P +   +    +P I  ++    +++++ +  +  +   D  +SKALV  T   A IP     K+K  +RLRTEH VY LPD+H LL   E+R+ DDP  YLLAIW PGET++S  PP+ +CSS +  K+C  K C  C ++RE    I RGTILIPCRTAMRG+FPLNGTYFQ NEVFADH++SL PI   RE    L +R +Y G+++ SIFK L T  I+ CFW G++C+R FD+    P
Sbjct:  779 PFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDP 1020          
The following BLAST results are available for this feature:
BLAST of EY684576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH7.024e-10273.28Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH2.951e-10073.50Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML2_ARATH2.442e-6256.16DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH1.533e-5646.91DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-G07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684576 ID=EY684576; Name=EY684576; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGATTCTGTGAAGATCCAGAAGAGATTCCTACTATCAAGCT
TAACATGAAAGAGTTCACTCAGACCTTACAGAATTATATGCAAGAGAATT
TGGAGCTTCAAGAAGGTGATATGTCCAAAGCTTTAGTTGCTTTAACAGTG
GGAGCAGCATCTATTCCTGCACCCAAGCTTAAGAATGTGAGTCGTCTACG
AACAGAGCACCAAGTGTATGAACTTCCAGATTCACACCCTCTTTTGCGTG
GGATGGAAAAAAGAGAACCTGATGACCCAGGCAGATATCTTCTTGCCATA
TGGACACCAGGTGAAACGGCAAATTCTATTCAACCACCTGAAAGTAGGTG
CAGTTCTCAAGAACATGGCAAAATGTGCAATGAGAAGACATGTTTTTCAT
GCAACAGTGTTCGGGAATCAGAGTTTCAAATTGTTCGAGGGACCATTTTG
ATACCGTGTCGAACAGCAATGAGAGGAAGCTTTCCCCTAAATGGCACATA
TTTCCAAGTTAATGAGGTATTTGCAGACCATGATTCTAGCTTGAAGCCCA
TTAATGTTCCCAGGGAGTGGTTATGGAACCTACCTAGGCGGACTGTGTAT
TTTGGAACCTCTATACCTTCAATATTTAAAGGTTTAACAACAGAAGGAAT
TCAGCACTGCTTCTGGAGAGGATATGTTTGTGTGAGGGGATTTGACCAAA
ATCACGAGCACCCCGTCCTCTGATGGCGAGACTGCATTTCCCAGCAAGCA
AGTTGAACAAGGTACCAGGTAAAGCAGATGCAGATCATAAGTAGACGTCA
ATGGCCATGTTTCTATGTATTGGAGAGAATGACCACCAGCTAGTGGCTCA
CCGTTTAAAACTTTGCCAATTTTCCTCCCCTATGGGTGGCTCGAACCG
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