EY684573

Overview
NameEY684573
Unique NameEY684573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684573_ssr244 microsatellite EY684573_ssr244:244..255. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY684573 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  304 PPPIGPKRCSKVKNLGMYSYWNKGIGTVVTAHHDPQRLKPSAALFNEVHSACVTTMHYALDDIED 498
            PPPIGPKR SKV+ +   SYW KG+G+VV    DP+   P    FN+V+ A V+T +YALD+I++
Sbjct:   59 PPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQE 123
[Close]
BLAST of EY684573 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  304 PPPIGPKRCSKVKNLGMYSYWNKGIGTVVTAHHDPQRLKPSAALFNEVHSACVTTMHYALDDIED 498
            PPPIGPKR +KV+ L   SYW KG+G+VV    DP    P    FN+V+ A V+T +YALD++E+
Sbjct:   77 PPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEE 141
[Close]
BLAST of EY684573 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  304 PPPIGPKRCSKVKNLGMYSYWNKGIGTVVTAHHDPQRLKPSAALFNEVHSACVTTMHYALDDIED 498
            PPPIGPKR +KV+ L   SYW KG G+VV    DP    P    FN+V+ A V+T +YALD+IE+
Sbjct:   75 PPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEE 139
The following BLAST results are available for this feature:
BLAST of EY684573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAE_SPIOL1.553e-1150.77Photosystem I reaction center subunit IV, chloropl... [more]
PSAEB_NICSY1.553e-1150.77Photosystem I reaction center subunit IV B, chloro... [more]
PSAEA_NICSY3.460e-1152.31Photosystem I reaction center subunit IV A, chloro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-G04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684573 ID=EY684573; Name=EY684573; organism=Citrus sinensis; type=EST; length=921bp
TTGCTAACCCACGCGTCCGGAAAATCTCTTCCCTTGTATACAGAAACTCC
TAAACAAACAAAGATAAATCGATGGCTAGCTGCTGCATTTCATCTACTGC
ATTCTGGGATATCACTTACATCCCAATGTTGCTACACTTGTAAACTCTCG
TTCCTTAACCGACATGCTGCTTTTCCCTCCACATAACTACAGCTCCTACA
TATTTCAAGCTTGTTGTACTGGCTTCTGACGAAGGTGCTGCCCCTGCTGC
TGCTGCCCCCTCCGCTGCCCCAGCTCATGGTGAAGCATCTCCACCTCTCC
TTTCCACCTCCGATTGGACCCAAGAGATGCTCCAAGGTAAAAAATCTCGG
GATGTATTCCTACTGGAACAAAGGCATTGGGACTGTGGTTACTGCTCACC
ATGATCCCCAGAGACTGAAGCCATCTGCGGCTCTATTCAACGAAGTCCAC
TCTGCCTGTGTAACAACTATGCACTATGCATTGGATGATATTGAGGATGA
CAATGAGATGTGACTCTTCATGTGCTTGTTATTCCCCAGCTCAAATTAGC
GATCTGGAGACAAGACTGAGTATTCTGATCTCCATGGGGCATTGGACTTT
AATCAGGTGGCGTCTCTTGTAGAAGAGCTACGCTAGCTTCGGCGTCAACA
AATGTCATTGGTAATGCATATTTGCGTCTAAATTCATGCCTTCGGGCTGT
GACTAAAAAAAAAGATCCTGGAATCCCAGGTATTACGAAGGTTAGACGCA
GATGTCTTGGGCCCCGGTTTCCTCGGGTGGGTGAGAGGAGAGGCGGGCGC
AAATTACGTATCCGACACACGGGCACCAACTGAGGTGTAGAGANTCCCGC
CGCGTTGTGTGTGCTTGACCCGGGCGGTGCTAAATACACTTTCTTCGTGT
ATACACAGTGTGACCGACAGA
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