EY684555

Overview
NameEY684555
Unique NameEY684555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.749e-62
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            LNGEFI+TVQQRGAAIIKARK           CDHIRDWV+GTPEGT+VSMG YSDGSYNVP G IYSFP TCRNGEWTIVQGL ID++ +KK+DLTAEEL EEKDL Y C
Sbjct:  220 LNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEKDLAYSC 330          

HSP 2 Score: 85.8853 bits (211), Expect = 5.749e-62
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            R  VPVSDVKNVIIWGNHSS+ YPDVNHATV T+ GEKPVRELVK+D   EW
Sbjct:  171 RLSVPVSDVKNVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKND---EW 219          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 4.802e-61
Identity = 82/111 (73.87%), Postives = 90/111 (81.08%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            L+GEFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMG YSDGSY+VP G IYSFP TCRNG+W+IVQGL IDE  +KK+DLTAEEL EEKDL Y C
Sbjct:  220 LDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEKDLAYSC 330          

HSP 2 Score: 88.1965 bits (217), Expect = 4.802e-61
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            R  VPVSDVKNVIIWGNHSSS YPDVNHA V T++GEKPVRELVKDDA ++
Sbjct:  171 RLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLD 221          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.360e-60
Identity = 83/111 (74.77%), Postives = 90/111 (81.08%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            LNGEFI+TVQQRGAAIIKARK           CDHIRDWVLGTP+GT+VSMG YSDGSYNVP G IYSFP TC NGEW IVQGLSIDE  +KKLDLTAEEL+EEK+L + C
Sbjct:  220 LNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLAHSC 330          

HSP 2 Score: 85.8853 bits (211), Expect = 2.360e-60
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            R  V VSDVKNVIIWGNHSS+ YPDVNHATVNT AGEKPVR+LV DDA
Sbjct:  171 RLNVQVSDVKNVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDA 218          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.797e-58
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            LNGEFITTVQQRGAAIIKARK           CDHI DWVLGTPEGTWVSMG YSDGSYNVP G IYSFP TC+NGEWTIVQGL ID+  +KK+D TA EL EEK L Y C
Sbjct:  220 LNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEKTLAYSC 330          

HSP 2 Score: 78.1814 bits (191), Expect = 2.797e-58
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            R  V VSDVKNVIIWGNHSS+ YPDVNHATV T   +KPVRELV DDA
Sbjct:  171 RLNVQVSDVKNVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDA 218          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 6.198e-58
Identity = 80/111 (72.07%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            LNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMG YSDGSY VP G IYSFP TC  GEW IVQGL IDE  +KK+D TA+EL+EEK L Y C
Sbjct:  220 LNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAYSC 330          

HSP 2 Score: 84.3445 bits (207), Expect = 6.198e-58
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            R  V VSDVKNVIIWGNHSSS YPDVNHATV T+ GEKPVRELV DD   EW
Sbjct:  171 RLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDD---EW 219          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 7.338e-56
Identity = 80/111 (72.07%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            LN EFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMG YSDGSY VP G IYSFP TC  GEWTIVQGL IDE  +KK+D TA+ELSEEK L Y C
Sbjct:  220 LNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEKTLAYSC 330          

HSP 2 Score: 78.5666 bits (192), Expect = 7.338e-56
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEW 273
            +  V V+DVKN IIWGNHSS+ YPDVNHATV T +GEKPVRELV DD   EW
Sbjct:  171 KLNVQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADD---EW 219          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.247e-55
Identity = 80/111 (72.07%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTYPC 598
            LNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGTWVSMG YSDGSYNVP G IYSFP TC++GEW IVQGL IDE  ++K+D T  EL EEK L Y C
Sbjct:  220 LNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKALAYSC 330          

HSP 2 Score: 74.7146 bits (182), Expect = 1.247e-55
Identity = 36/48 (75.00%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            R    VSDVKNVIIWGNHSSS YPDVN  TV T +GEK VRELV DDA
Sbjct:  171 RLNAQVSDVKNVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDA 218          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 118.242 bits (295), Expect = 4.970e-38
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG  SDG SY VP   +YSFP T ++  W IV+GL I++  ++K+DLTA+EL+EEK+  +
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAF 328          

HSP 2 Score: 61.6178 bits (148), Expect = 4.970e-38
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V   DVKNVIIWGNHSS+ YPDVNHA V   A E  V E VKDD+
Sbjct:  173 VTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDS 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 5.372e-37
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG  SDG SY +P   +YSFP T ++  W +V+GL I++  ++K+DLTA+EL+EEK+  +
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEKETAF 328          

HSP 2 Score: 58.9214 bits (141), Expect = 5.372e-37
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V   DVKNVIIWGNHSS+ YPDVNHA V     E  V E +KDD+
Sbjct:  173 VTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS 217          
BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 5.372e-37
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDG-SYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKDLTY 592
            L GEF+TTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG  SDG SY VP   +YSFP   +N  W  V+GL I++  ++K+DLTA+EL+EEK+  +
Sbjct:  219 LKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAF 328          

HSP 2 Score: 60.077 bits (144), Expect = 5.372e-37
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
Query:  127 VPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDA 261
            V  +DVKNVIIWGNHSS+ YPDVNHA V     E  V E +KDD+
Sbjct:  173 VTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS 217          
The following BLAST results are available for this feature:
BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
MDHC2_ARATH5.749e-6275.68Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC1_ARATH4.802e-6173.87Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MEDSA2.360e-6074.77Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC_MESCR2.797e-5873.87Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_MAIZE6.198e-5872.07Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_ORYSJ7.338e-5672.07Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_BETVU1.247e-5572.07Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_PIG4.970e-3855.45Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_BOVIN5.372e-3753.64Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_HUMAN5.372e-3753.64Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC
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