EY710083

Overview
NameEY710083
Unique NameEY710083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710083 vs. ExPASy Swiss-Prot
Match: FB304_ARATH (F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.629e-42
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:   15 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSNNKIKSLDMFRHDASCLALLMDGSASLGLDLSFV 224
            DKV+IFSQFLEHIHVIEQQLT AGIKF  MYSPM S NK+K+L MF++DA C+ALLMDGS +LGLDLSFV
Sbjct: 1194 DKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFV 1263

HSP 2 Score: 60.4622 bits (145), Expect = 2.629e-42
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  226 TRVFLMEPIWDRSVEEQVIIRAHRMGATRPIHVE 327
            T VFLMEPIWD+S+EEQVI RAHRMGA RPI VE
Sbjct: 1264 THVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVE 1297

HSP 3 Score: 41.2022 bits (95), Expect = 2.629e-42
Identity = 20/53 (37.74%), Postives = 33/53 (62.26%), Query Frame = 2 
Query:  326 KTLAMRGTVEEQMLEFLQDPNRCKRMLK*ELCQNRNGKGFHLIETLHEIAENN 484
            +TL MRGT+EEQM+ FL+D  +  R+L  +  + +  +      TLH++ E+N
Sbjct: 1297 ETLTMRGTIEEQMMRFLEDAEKSDRLLSGDYIEAKQ-ETTRSRRTLHDLVESN 1348
The following BLAST results are available for this feature:
BLAST of EY710083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB304_ARATH2.629e-4278.57F-box protein At3g54460 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-F12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710083 ID=EY710083; Name=EY710083; organism=Citrus sinensis; type=EST; length=943bp
AACAGGCACTCCCTGATAAAGTTATTATTTTTTCTCAGTTTCTTGAGCAT
ATACATGTCATCGAGCAACAGTTAACAGTTGCTGGTATCAAATTTGCTGG
TATGTACAGTCCAATGCATTCTAACAACAAGATAAAGTCACTGGACATGT
TCCGGCACGACGCTAGCTGTCTGGCTCTTTTAATGGATGGAAGTGCATCA
TTGGGTCTTGATTTGAGCTTTGTAAACTCGTGTGTTTCTAATGGAACCAA
TCTGGGATAGAAGCGTGGAGGAACAAGTCATTATTCGCGCTCATCGGATG
GGCGCTACTCGTCCTATTCATGTGGAAAACTTTGGCAATGCGTGGTACAG
TTGAAGAGCAAATGCTTGAATTCCTACAGGATCCCAATAGGTGTAAAAGA
ATGTTGAAATAAGAGCTTTGCCAAAACCGGAACGGGAAGGGGTTCCATCT
CATCGAAACACTACATGAAATTGCAGAGAACAATTAATTTATCCAAATTT
TTAGTTTTGGGGAAAACAATCTTCATAATATAAAAAAGGTAATGGGAATT
CCCATACCCCCAAATCCCAGAAATCAGCGATAAGGTTATTAATTTACGAA
AAAAAAACATTTTACCATTTTTTCAATTGGGGGGAAAAAATAAAAATTTT
GAAAATATGAAAGGTAGGAAAAAATTAACCAGAGATAAAAAAAAAACTAA
CCAAAATCCAGGATTTAAAAATTGAAATGAAGAGAAATTTATAAATAAAA
TAAAAATTTCAGGTTTTCCCTAAAATAAAAAAAAAAAAAATATAAAGAAA
GAAAAGATTTAAAGAGTCTTAAACAAAAACAAAAGTACATACAAAAAAAT
GAAGAAAAGAGATATAGAAAGAATGAGATCAAAAAATGAAAATAGCAAAA
AAGAATCACATCTAATTGAGGAAACATTACAAGAGTATGGTAA
back to top