EY710078 | Citrus Genome Database

Overview


Name	EY710078
Unique Name	EY710078
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	994

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_ARATH (Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.440e-46
Identity = 86/123 (69.92%), Postives = 97/123 (78.86%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFWVGSIEGRVGVLHLDESQQSKNFTFKCHRNGSEKCSVLSLTSFYTSH--FCNCWDRKGHLIFGEKEIKKGLQGMSR 759
            PLMVVGTADRNL+VFNLQNPQTEFKRI SPLKYQTRCV AFPDQQGF VGSIEGRVGV HLD+SQQSKNFTFKCHR+G++  SV SL +F+  H  F       G   F +K+ K+ L+ MSR
Sbjct:  166 PLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGNDIYSVNSL-NFHPVHGTFATA-GSDGAFNFWDKDSKQRLKAMSR 286

HSP 2 Score: 45.8246 bits (107), Expect = 6.440e-46
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            +YWDTRQ NPV TQQLPD+CY
Sbjct:  139 KYWDTRQQNPVHTQQLPDKCY 159

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_XENTR (mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.871e-24
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRN 627
            P+ VV TA+R L+V+ L+N  +EF+RI+SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262

HSP 2 Score: 40.4318 bits (93), Expect = 6.871e-24
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR PNP+ T QLP+RCY
Sbjct:  154 KFWDTRSPNPLLTLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 6.871e-24
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.523e-23
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHR-NGSEKCS-----VLSLTSFYTSH 678
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR NG+   +      ++  SF+  H
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVH 285

HSP 2 Score: 38.5058 bits (88), Expect = 2.523e-23
Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR PNP+ + Q+P+RCY
Sbjct:  154 KFWDTRSPNPMMSLQMPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 2.523e-23
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.201e-22
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRNGSEKCS 645
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+     S
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

HSP 2 Score: 35.8094 bits (81), Expect = 1.201e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR  NP+   QLP+RCY
Sbjct:  154 KFWDTRSSNPMMVLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 1.201e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.201e-22
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRNGSEKCS 645
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+     S
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

HSP 2 Score: 35.8094 bits (81), Expect = 1.201e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR  NP+   QLP+RCY
Sbjct:  154 KFWDTRSSNPMMVLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 1.201e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.201e-22
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRNGSEKCS 645
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+     S
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

HSP 2 Score: 35.8094 bits (81), Expect = 1.201e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR  NP+   QLP+RCY
Sbjct:  154 KFWDTRSSNPMMVLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 1.201e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.201e-22
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRNGSEKCS 645
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+     S
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

HSP 2 Score: 35.8094 bits (81), Expect = 1.201e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR  NP+   QLP+RCY
Sbjct:  154 KFWDTRSSNPMMVLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 1.201e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.201e-22
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRNGSEKCS 645
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+     S
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

HSP 2 Score: 35.8094 bits (81), Expect = 1.201e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR  NP+   QLP+RCY
Sbjct:  154 KFWDTRSSNPMMVLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 1.201e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.201e-22
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  397 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ----GFWVGSIEGRVGVLHLDESQQSK-NFTFKCHRNGSEKCS 645
            P+ VV TA+R L+V+ L+N  +EF+RI SPLK+Q RCVA F D+Q    GF +GSIEGRV + +++    +K NFTFKCHR+     S
Sbjct:  181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268

HSP 2 Score: 35.8094 bits (81), Expect = 1.201e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCY 391
            ++WDTR  NP+   QLP+RCY
Sbjct:  154 KFWDTRSSNPMMVLQLPERCY 174

HSP 3 Score: 23.0978 bits (48), Expect = 1.201e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  681 LQLLGSEGAFNFWGK 725
            L  +GS+G F+FW K
Sbjct:  288 LATVGSDGRFSFWDK 302

[Close]

BLAST of EY710078 vs. ExPASy Swiss-Prot
Match: GLE2_YEAST (Nucleoporin GLE2 OS=Saccharomyces cerevisiae GN=GLE2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-21
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 1

Query:  400 LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFWVGSIEGRVGVLHLDESQQSKN-FTFKCHR 624
            L+VV TA+R++ + NL NP T FK   SPLK+QTRCVA + +  G+ +GS+EGR  + ++D+  Q K+ F+FKCHR
Sbjct:  178 LLVVATAERHIAIINLANPTTIFKATTSPLKWQTRCVACYNEADGYAIGSVEGRCSIRYIDDGMQKKSGFSFKCHR 253

HSP 2 Score: 34.6538 bits (78), Expect = 2.092e-21
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  329 RYWDTRQPNPVRTQQLPDRCYA 394
            +YWD RQP PV T  +P+R Y+
Sbjct:  150 KYWDMRQPQPVSTVMMPERVYS 171

HSP 3 Score: 22.7126 bits (47), Expect = 2.092e-21
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 3

Query:  693 GSEGAFNFWGK 725
            G +G FNFW K
Sbjct:  288 GGDGTFNFWDK 298

The following BLAST results are available for this feature:

BLAST of EY710078 vs. ExPASy Swiss-Prot

BLAST of EY710078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18


Match Name	E-value	Identity	Description
RAE1L_ARATH	6.440e-46	69.92	Rae1-like protein At1g80670 OS=Arabidopsis thalian...	[more]
RAE1L_XENTR	6.871e-24	53.66	mRNA export factor OS=Xenopus tropicalis GN=rae1 P...	[more]
RAE1L_DANRE	2.523e-23	46.67	mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=...	[more]
RAEL1_PONAB	1.201e-22	51.14	mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV...	[more]
RAEL1_PIG	1.201e-22	51.14	mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1	[more]
RAE1L_RAT	1.201e-22	51.14	mRNA export factor OS=Rattus norvegicus GN=Rae1 PE...	[more]
RAE1L_MOUSE	1.201e-22	51.14	mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV...	[more]
RAE1L_HUMAN	1.201e-22	51.14	mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV...	[more]
RAE1L_BOVIN	1.201e-22	51.14	mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1	[more]
GLE2_YEAST	2.092e-21	50.00	Nucleoporin GLE2 OS=Saccharomyces cerevisiae GN=GL...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-111-F05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710078 ID=EY710078; Name=EY710078; organism=Citrus sinensis; type=EST; length=994bp
TTAATGAAACCAGGACCGCGGTACGGTCGGATTCCGGGTCGACCCACGCG
TCCGCGTTGATACAACGCCACGCGGGGTATGCGCAGAGTCTTAACCGACA
CCCACTACATTTCTCCTCTGTCCTCTCTATTACTTCTCGATTCCCTCTTC
GTTCAAATCATCACCGAATCAACTAATAATCTTTCTCTCTGTCACTCACT
AACTAAATATCACGAAACGATAAAAAATTAGCAAGTTAATAGCAAATTAA
CTGAACTTCTTCAAGCAATAATGGCTACTTTCGGTGCTGCTGCCGTTGCC
ACCAATCAAAACCCTAACAAGTCCATCGAGGTACTGGGATACAAGGCAGC
CAAATCCTGTGCGCACTCAACAGCTGCCTGACCGCTGCTATGCGCTCCGC
TTATGGTTGTTGGAACTGCAGATAGAAATCTAGTTGTCTTCAACTTGCAG
AATCCTCAGACTGAGTTCAAGAGAATCAATTCCCCTTTGAAGTACCAGAC
GAGATGTGTTGCTGCCTTTCCTGACCAGCAAGGTTTCTGGGTTGGTTCAA
TTGAGGGAAGGGTCGGCGTTCTCCATCTTGATGAATCACAGCAAAGTAAG
AACTTCACTTTCAAATGCCACAGAAACGGGAGTGAGAAATGCTCTGTCCT
CTCATTAACTTCCTTCTATACATCACACTTTTGCAACTGCTGGGATCGGA
AGGGGCATTTAATTTTTGGGGAAAAGGAAATAAAAAAGGGGCTCCAGGGC
ATGTCAAGGGGGGGGGGAAACCTAAACCTTTGGAAAACATTCAAAAAGGG
AGGGGTCCAAATTTTGGGGAAATGGGGGGGGGGTAAGGACGGGGGAAAAA
GGGGGGGAAAAAAAAACACAACCCCGGGAAAAAAAAAAAAAAATTAAATT
TTTATTCGGGCCTTGGGCCCCAGGGTTGGGGGGGAAAACCCCAAAAAAAA
AAGAAGCAAAAACCCCACGGGGGGACAAAAAAAAAAAAAATGGA