EY710061

Overview
NameEY710061
Unique NameEY710061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710061 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.179e-33
Identity = 88/158 (55.70%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   82 MSSCINPSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSKLYG*NIQKTSRRAEGKSEDSD*GCNRASGSVGAD**FAKNLDWLYL---FEPEIRNIFA*YPQPIXXXXXXXXXXLYATSLEFQ 546
            MSSCINPSTL TSVN FKCLPLATN+AAIRIMAK KPVQCL+S KYDNLTVDRRSANYQPSIWDHDFLQSLNS       ++ +    GK + +          +        NL  L L   FE EIRNI                  LYATSLEF+
Sbjct:    1 MSSCINPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLE----LIDNLQRLGLAHRFETEIRNILNNIYNN-NKDYNWRKENLYATSLEFR 153          

HSP 2 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  299 ANYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQKTWIGFIFLSLKFGTYLRNIHNP*KRINLEKRKICMQPPLNSKQLKQLGLSCFSKEVFVVFKRKTRIGFNLEEIQG 646
            +NYTDE YKRRAEEL+GKVK AIKDV EPLDQLELIDNLQ+  +   F   +    L NI+N  K  N  K  +     L  + L+Q G    S+EVF  FK   + GF  ++ +G
Sbjct:   73 SNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRF-ETEIRNILNNIYNNNKDYNWRKENL-YATSLEFRLLRQHGYP-VSQEVFNGFK-DDQGGFICDDFKG 184          
BLAST of EY710061 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.605e-11
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  145 LATNRAAIRIMAKNKPVQCLVSTKYDNLT-VDRRSANYQPSIWDHDFLQSLNSKLYG 312
            L T+R     +A+  PVQC+V+ K      + RRSANYQPSIW+HD+++SL  +  G
Sbjct:   27 LVTSRTRNGYLAR--PVQCMVANKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVG 81          

HSP 2 Score: 39.2762 bits (90), Expect = 3.605e-11
Identity = 32/100 (32.00%), Postives = 49/100 (49.00%), Query Frame = 2
Query:  305 YTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQKTWIGFIFLSLKFGTYLRNIHNP*KRINLEKRKICMQPPLNSKQLKQLGLSCFSKEVFVVFK 604
            Y  ET  R+   LK +V+  +  V  PL+QLELI+ LQ+  + + F   +    L  ++N     +  K +      L  + L+Q G S  S+EVF  FK
Sbjct:   79 YVGETCTRQINVLKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHF-EEEIKRILDGVYNNDHGGDTWKAENLYATALKFRLLRQHGYS-VSQEVFNSFK 176          
The following BLAST results are available for this feature:
BLAST of EY710061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RLC1_CITLI3.179e-3355.70(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL3.605e-1145.61Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-D12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710061 ID=EY710061; Name=EY710061; organism=Citrus sinensis; type=EST; length=909bp
CACGCGTCCGCCCACGCGTCCGATTTGAGAATCCTTCCCAAGTATACCTG
TAAGCTAGCTTACACTGCATCTGTATATCCAATGTCTTCTTGCATTAATC
CCTCAACCTTGGCTACCTCTGTAAATGGTTTCAAATGTCTTCCTCTTGCA
ACAAATAGAGCAGCCATCAGAATCATGGCAAAAAATAAGCCAGTCCAATG
CCTTGTCAGCACCAAATATGATAATTTGACAGTTGATAGGAGATCAGCAA
ACTACCAACCTTCAATTTGGGACCATGATTTTTTGCAGTCACTGAATAGC
AAACTATACGGATGAAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAA
AAGTGAAGACAGCGATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAG
CTGATTGATAATTTGCAAAAAACTTGGATTGGCTTTATCTTTTTGAGCCT
GAAATTCGGAACATATTTGCGTAATATCCACAACCCATAAAAAAGAATAA
ATTTGGAAAAAAGAAAAATCTGTATGCAACCTCCCTTGAATTCCAAACAA
CTTAAACAACTTGGGCTATCCTGTTTCTCGAAGGAGGTTTTCGTGGTTTT
TAAAAGAAAAACGAGGATAGGCTTCAATTTGGAAGAAATTCAGGGGAAAA
ATGAGAATAGGAAAAAGCCATAGAGATACAATCTTTAAAAGGAAGAAAAA
ATCAAGGGAAGAAAGCACTGGAAATATATCCAGATAAGAAATCAAAAAAG
AAAAGAAAAATCAACCAAAAAAAACACAAAGAAAAAAAATAAATTATTTG
ATGAACAAAAAAAATTAGAAAAAAGGAGCAAAAGGATAAACCCCCTTCAA
AGGAAGAGAAAACGAGCACGAAGAAAAAAAAAGAGAAAAAAGAGGAGGAA
TATATAAAC
back to top