EY710060

Overview
NameEY710060
Unique NameEY710060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710060 vs. ExPASy Swiss-Prot
Match: EMB30_ARATH (Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.962e-63
Identity = 89/119 (74.79%), Postives = 104/119 (87.39%), Query Frame = 1 
Query:    1 AYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEASEVGFEALLFIMSDGTHLLPANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAK 357
            AYCEQI  EVSRLVKANA HIRSQ GWRTITSLLSITARHPEASE GF+A+ F+MS+GTHL PANYVLC+D+ARQFAESRVGQ+ERS+RAL+LM  S++ LA+W   AKE+MGE++  K
Sbjct: 1118 AYCEQIAIEVSRLVKANANHIRSQAGWRTITSLLSITARHPEASESGFDAVSFVMSEGTHLYPANYVLCVDAARQFAESRVGQSERSIRALDLMGDSLEFLAKWALSAKENMGEEDFGK 1236

HSP 2 Score: 77.411 bits (189), Expect = 8.962e-63
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 2 
Query:  359 LSQDIGEMWLKLVQALRKVCLDQRENGRNLALLSLQKWP*QGWMEFHPSKGIVG*RVLEMEIFTMLDDLLGIAQGPSPKGLPEIREGTLKLAMKPPFKRIFII*LHGNTQFKTF 700
            +SQDIGEMWL+LVQ LRKVCLDQRE+ RN AL SLQK    G ++       +  +  +  IFT+LDDLL IA G S K    + EGTL LA+K    ++F+  L   +Q  TF
Sbjct: 1237 MSQDIGEMWLRLVQGLRKVCLDQREDVRNHALQSLQKC--LGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIAAG-SQKDYRNM-EGTLLLAIK-LLSKVFLQQLQELSQLSTF 1345
The following BLAST results are available for this feature:
BLAST of EY710060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EMB30_ARATH8.962e-6374.79Pattern formation protein EMB30 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-D11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710060 ID=EY710060; Name=EY710060; organism=Citrus sinensis; type=EST; length=910bp
GCATACTGTGAACAGATTACCCAGGAAGTCAGCCGCCTTGTGAAAGCCAA
TGCTACTCATATCAGATCCCAGATGGGTTGGCGCACTATTACATCCCTAC
TTTCCATCACAGCTCGACATCCAGAAGCTTCTGAAGTGGGATTCGAAGCG
CTATTGTTCATTATGTCTGATGGAACCCACTTGTTACCTGCCAATTATGT
TCTCTGCATAGATTCCGCAAGGCAGTTTGCGGAGTCTCGTGTTGGACAGG
CAGAGCGGTCTGTCCGTGCACTAGAACTTATGTCTGGTTCCGTTGATTGT
TTAGCAAGATGGGGTCGTGAGGCGAAGGAATCAATGGGAGAGGATGAAGT
TGCCAAATTTGTCTCAGGATATAGGGGAAATGTGGCTCAAGCTTGTGCAA
GCATTGAGGAAAGTTTGTTTAGACCAGAGAGAAAATGGCAGAAACCTTGC
TCTTCTTTCTTTGCAGAAATGGCCTTGACAGGGGTGGATGGAATTTCATC
CTTCCAAAGGGATTGTGGGTTAACGTGTTTTGGAAATGGAAATCTTCACC
ATGCTTGATGACTTGCTTGGAATAGCTCAGGGTCCCTCCCCAAAGGGACT
ACCGGAAATAAGAGAAGGCACCCTTAAATTGGCCATGAAACCTCCCTTCA
AGAGGATTTTTATCATTTAATTACATGGAAACACTCAATTTAAAACATTC
CGGGAGATTGAGGGTGGGGAATCCATTAGACCAAAGGGAAGATATTAGTG
AGAGGGAAAAGGTAGGGGGGGAAAAGAAATGAAAAAGGTTATAGGAAAAG
GGAGAAAGAGAAATAATAGAAAAGAAATTATAAATAAATCAAAGCAAAAA
AAAAAAAAGAATTTAGCCCACAAAAATGACGTTACAAAATAAAAACAAAA
CACTTTAGCG
back to top