EY710046

Overview
NameEY710046
Unique NameEY710046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: FB304_ARATH (F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 9.765e-59
Identity = 99/130 (76.15%), Postives = 114/130 (87.69%), Query Frame = 3
Query:   15 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRKLL 404
            DKV+IFSQFLEHIHVIEQQLT AGIKF  MYSPM S NK+K+L MF++DA C+ALLMDGS +LGLDLSFVT VFLMEPIWD+S+EEQVISRAHRMGA RPI VETL MRGT+EEQM+ FL+D ++  +LL
Sbjct: 1194 DKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMMRFLEDAEKSDRLL 1323          

HSP 2 Score: 45.0542 bits (105), Expect = 9.765e-59
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  418 VKPEREGARSHRTLHDFAENNYLSHLSFVRTN 513
            ++ ++E  RS RTLHD  E+NYLSHLSFVR++
Sbjct: 1328 IEAKQETTRSRRTLHDLVESNYLSHLSFVRSD 1359          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: YBMA_SCHPO (Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe GN=SPBC582.10c PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.573e-14
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   18 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 389
            K IIFSQF   + +I+  L  AGI F      M++  + KSLD+ R D+    LL      +LGL+L+  +RV L +  W+ ++EEQ I R HR+G  R + V  L +  T+EE+++E LQ+  R
Sbjct:  672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVE-LQNLKR 795          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: RAD5_SCHPO (DNA repair protein rad5 OS=Schizosaccharomyces pombe GN=rad8 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.573e-14
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   12 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 368
            P+KV+IFSQF   + +I   L    + +A     M    +  +L+ FR+D     L++   A  +GL+L+    VF+M+P W  S+E Q I R HR+G  +P+ V    +R TVEE+ML+
Sbjct:  981 PEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLK 1100          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.316e-13
Identity = 40/133 (30.08%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   15 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRKLLKE 410
            +K++++SQF +++ ++   L +  I+       M ++ + KSL  F +D   L +L+   A S+GL+L+    V L EP ++ S+E+Q I R HR+G  +P+ V     + T+EE+++   +   + R+L+KE
Sbjct:  742 EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQR---KKRQLVKE 871          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNE (DNA repair protein RAD5 OS=Cryptococcus neoformans GN=RAD5 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.149e-12
Identity = 35/119 (29.41%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   18 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 368
            K ++FSQF   + +IE  LT  GI++      M  + +  +++ F  + +   + L+   +  +GL+L+    VFLM+  W+ ++E+Q I R HR+G  +P++V    ++GTVE+++++
Sbjct: 1037 KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMK 1155          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe GN=SPBC23E6.02 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12
Identity = 39/126 (30.95%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   15 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 389
            DK++IFSQF+  + +        GIK+      + ++ + ++L  F  D +   LL+   A ++GL+L+    V +++P W+  +EEQ + RAHR+G  +P+++  +    T+EE++L  LQD  R
Sbjct:  884 DKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLA-LQDRKR 1008          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae GN=RAD5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 3
Query:   18 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 368
            K ++FSQF   + +IE  LT A IKF  +   M    +   L+ F        LL+   A  +GL+L+   RVF+M+P W  ++E Q I R HRMG    + V+   ++ +VEE+ML+
Sbjct: 1004 KSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRAGGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLK 1121          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.367e-12
Identity = 37/116 (31.90%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   18 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 362
            K I+FSQ+   + +++  L+     F  +   +    + K L  F  D S L LLM   A  +G++L+  +  F+M+P W+ ++EEQ + R HR+G T+ + +    ++GTVEE+M
Sbjct:  881 KSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERM 996          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: RAD5_YARLI (DNA repair protein RAD5 OS=Yarrowia lipolytica GN=RAD5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.660e-11
Identity = 40/130 (30.77%), Postives = 68/130 (52.31%), Query Frame = 3
Query:    3 KALPD--KVIIFSQFLEHIHVIEQQLT---VAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 377
            K LP   K ++FSQF  ++ +I+ +L    +   +F G  S    ++ +K+  + +     ++L   G   +GL+L      F+M+P W  + E Q I R HRMG T+ +HV    +  +VEE+ML+  Q
Sbjct:  869 KQLPKDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKAFGLSKGSVLLISLKTGG---VGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQ 995          
BLAST of EY710046 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.167e-11
Identity = 38/127 (29.92%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   18 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 389
            K ++ SQF   + +IE  L  +G  F  +   M    +++S+  F++  +    + LL   +  +GL+L   +RVFLM+P W+ + E+Q   R HR+G  + + +    ++ +VEE ML+ +Q+T R
Sbjct:  847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK-IQNTKR 972          
The following BLAST results are available for this feature:
BLAST of EY710046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FB304_ARATH9.765e-5976.15F-box protein At3g54460 OS=Arabidopsis thaliana GN... [more]
YBMA_SCHPO3.573e-1438.40Uncharacterized ATP-dependent helicase C582.10c OS... [more]
RAD5_SCHPO3.573e-1435.83DNA repair protein rad5 OS=Schizosaccharomyces pom... [more]
YF2C_SCHPO2.316e-1330.08Uncharacterized ATP-dependent helicase C17A2.12 OS... [more]
RAD5_CRYNE1.149e-1229.41DNA repair protein RAD5 OS=Cryptococcus neoformans... [more]
YG42_SCHPO1.501e-1230.95Uncharacterized ATP-dependent helicase C23E6.02 OS... [more]
RAD5_GIBZE2.560e-1235.59DNA repair protein RAD5 OS=Gibberella zeae GN=RAD5... [more]
SM3L2_ARATH4.367e-1231.90Putative SWI/SNF-related matrix-associated actin-d... [more]
RAD5_YARLI1.660e-1130.77DNA repair protein RAD5 OS=Yarrowia lipolytica GN=... [more]
HLTF_MOUSE2.167e-1129.92Helicase-like transcription factor OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710046 ID=EY710046; Name=EY710046; organism=Citrus sinensis; type=EST; length=963bp
AAAAGGCACTCCCTGATAAAGTTATTATTTTTTCTCAATTTCTTGAGCAT
ATACATGTCATCGAGCAGCAGTTAACAGTTGCTGGTATCAAATTTGCTGG
TATGTACAGTCCAATGCATTCTAGCAACAAGATAAAGTCACTGGACATGT
TCCGGCACGACGCTAGCTGTCTGGCTCTTTTAATGGATGGAAGTGCATCA
TTGGGTCTTGATTTGAGCTTTGTAACTCGTGTGTTTCTAATGGAACCAAT
CTGGGATAGAAGCATGGAGGAACAAGTCATTAGTCGCGCTCATCGGATGG
GCGCTACTCGTCCTATTCATGTGGAAACTTTGGCAATGCGTGGTACAGTT
GAAGAGCAAATGCTTGAATTCCTACAGGATACCGATAGGTGTAGAAAATT
GTTGAAAGAAAAAGCTTGTCAAACCTGAACGTGAAGGGGCTCGATCTCAT
CGTACACTACATGACTTTGCAGAGAACAATTATTTATCTCATCTTAGCTT
TGTGAGAACAAACTCATAATAAAAAAGGAAAGGGATACACATACCCCAAT
CCCATAATCCGCATTTGTTATTACTTCCCAAAAAAGAACATTTTACATTT
TCCCTTTGGGAAGGAAAAAAAGGCTTGGAAATTGGTGGGTGAAAAAATTT
AACGGGGATTTTAACCTCCACCTTCCTTCTCCGGGCTTTAAATTTGGGAA
GGTTGGAATTTGCATGGGAAAATGAATTTCCCGGCCCCAACAAAAAAAGA
AAAAAAACTTTCTCCAGTAGAAATTTTCCAGGTTCCCCAATTATCCAGGG
CCGGCAATTCAAAAAAAAGGGGTTTGAAAATTTTGGGGTTCCAAAAAAGG
AATTTCCCAAAAAAGCCCCCCCTCCAAGAGGCCCAATCGGGGGTGGGGAT
GTAAATTTTTTCCAACCCCCCCAACCCCCACCGCGAAAAACACCAAATAA
GGGCATCCCTTAA
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