EY710043

Overview
NameEY710043
Unique NameEY710043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.328e-29
Identity = 85/218 (38.99%), Postives = 121/218 (55.50%), Query Frame = 1
Query:   97 TMALSSGIAIGAKQSISPFFTVSQPSLSYRKQNFCLRASAEKNSSDGEEATKMVMRKEKSGWKIDFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKEKLS*SIFGGKGNKFPQTSPAGPW*GLAQRGKFLGGKKKI 750
            T ++S G  +GA      F   +     ++ Q+   R    +  S    +  +   +E +    ++  ++PPTPLLDT+NYPIHMKNLS ++L+QLA ELR+D++  VSKTGGHL ++LGVVELT+ALH VFNTP DKI +  +  +    K LTG+  KM T+ +   GL GF K+ E    S   G G+     S A    G+A      GGK  +
Sbjct:    5 TFSISRGGFVGALPQEGHFAPAAAELSLHKLQS---RPHKARRRSSSSISASLSTEREAA----EYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTVALHYVFNTPQDKI-LWDVGHQSYPHKILTGRRDKMPTMRQ-TNGLSGFTKRSESEYDSF--GTGHSSTTISAA---LGMAVGRDLKGGKNNV 208          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 8.845e-29
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  199 CLRASAEKNSSDGEEATKMVMRKEKSGWKIDFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            CL+ +   N+S      K+     + G   ++   +PPTPLLDTINYPIHMKNLS ++L+QL+ ELR+D++ +VSKTGGHL ++LGVVELT+ALH +FNTP DKI +  +  +    K LTG+  KM T+ +   GL GF K+ E
Sbjct:   42 CLKPN---NNSHSNRRAKVCASLAEKG---EYYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKI-LWDVGHQSYPHKILTGRRGKMPTMRQ-TNGLSGFTKRGE 178          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  289 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            ++  ++PPTP++DTINYPIHMKNLS ++L+QLA ELR+D + +VSKTGGHL ++LGVVELT+ALH VFN P D+I +  +  +    K LTG+  KM+TL +   GL GF K+ E
Sbjct:   65 EYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRI-LWDVGHQSYPHKILTGRREKMSTLRQ-TNGLAGFTKRSE 177          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.019e-22
Identity = 52/109 (47.71%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  307 PPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            P TPLLD ++YP  +K +   DL QLAAELRA++V++VS+TGGHL A LGVVELT+A+H++F+TP D++    +  +    K LTG+  ++ TL ++  GL GF ++ E
Sbjct:   10 PATPLLDKVDYPDDLKKIDDRDLPQLAAELRAEMVDAVSRTGGHLGAGLGVVELTIAIHKIFDTPHDRLIFD-VGHQCYPHKILTGRRDRIRTLRQE-DGLSGFTRRAE 116          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.019e-22
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  301 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            ++P TP+LD +NYP  ++ +S  DL Q A ELRA+++++VS+TGGHL ++LGVVEL++A+H VFNTP DK+    +  +    K LTG+  ++ TL +K  GL GF K+ E
Sbjct:    2 DRPHTPILDQVNYPSDLRRMSNADLAQCADELRAEVISAVSETGGHLGSSLGVVELSVAIHAVFNTPYDKLVWD-VGHQCYPHKVLTGRRDRIRTLRQK-DGLSGFTKRSE 110          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.047e-21
Identity = 51/109 (46.79%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  307 PPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            P TPLLD +N+P  +K +   DL +LA ELR +++++VSKTGGHL A LGVVELT+A+H+VFNTP+D++    +  +    K LTG+  ++ TL ++  GL GF ++ E
Sbjct:    5 PQTPLLDRVNFPSDLKEIDDRDLPELARELRDEMIDAVSKTGGHLGAGLGVVELTIAIHKVFNTPEDRLIFD-VGHQCYPHKILTGRRDRIRTLRQE-DGLSGFTRRAE 111          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.788e-21
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  313 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            TPLLDTI  P  ++ L  + L QLA ELR  +V+SVS+TGGH ++NLG +ELT+ALH V+NTPDD++    +  +    K LTG+  +M+T+ +K  GL GFPK+ E
Sbjct:    4 TPLLDTIQIPADLRELDRKQLPQLARELRDFLVDSVSQTGGHFASNLGSIELTIALHYVYNTPDDRLVWD-VGHQTYPHKILTGRRDRMHTMRQK-GGLAGFPKRDE 108          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.788e-21
Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  304 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            +P TPLLD +  P  MK LS  +LE+LA E+R+++++ V++TGGHL ++LGVVELT+ALH VFNTP DK+    +  +    K LTG+  +M TL +K  GL GF K+ E
Sbjct:    7 RPETPLLDRVCCPADMKALSDAELERLADEVRSEVISVVAETGGHLGSSLGVVELTVALHAVFNTPTDKLVWD-VGHQCYPHKILTGRREQMRTLRQK-GGLSGFTKRSE 114          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.866e-21
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  301 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            ++PPTPLLDT++ P  ++ L   DL QLA ELRA+++++VS TGGHL A LGVVELT+ALH VF+TP D + +  +  +    K LTG+  ++ TL +   GL GF K+ E
Sbjct:    3 DRPPTPLLDTVSTPEDLRRLKPADLRQLADELRAEMISAVSVTGGHLGAGLGVVELTVALHYVFDTPRD-VLIWDVGHQAYPHKILTGRRDRIRTLRQG-GGLSGFTKRSE 111          
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.866e-21
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  304 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKEKL 639
            +P TPLLD +  P+ ++ L   DL +LA ELRA++++ VS TGGHL A LGVVELT+ALH +FNTPDD+I    +  +    K LTG+  K+ TL ++  GL GF K+ E +
Sbjct:    3 RPLTPLLDCVLSPLDLRALPASDLARLADELRAEMIDVVSVTGGHLGAGLGVVELTIALHYIFNTPDDRIIWD-VGHQAYPHKILTGRRDKIRTLRQE-GGLSGFTKRSESI 112          
The following BLAST results are available for this feature:
BLAST of EY710043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 454
Match NameE-valueIdentityDescription
DXS_ORYSJ2.328e-2938.99Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH8.845e-2948.28Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN1.277e-2754.78Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHIME8.019e-2247.711-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS2_JANSC8.019e-2246.851-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_AGRT51.047e-2146.791-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_LARHH6.788e-2149.531-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS1_RHOS46.788e-2149.091-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_SPHWW8.866e-2148.651-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_BARBK8.866e-2148.211-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-C06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710043 ID=EY710043; Name=EY710043; organism=Citrus sinensis; type=EST; length=966bp
CCACGCGTCCGAATTAGCACAGCTTCCCTCTCTGTCTCTCTCACTTCCTC
CTTCGTTATTCATCTCGCGCTCACTACTGAATATTGGATCGCACCAACTA
TGGCTCTCTCTTCTGGGATTGCTATTGGAGCTAAACAATCTATTTCTCCA
TTTTTCACTGTTTCACAACCAAGCCTTAGTTACAGAAAACAGAATTTCTG
TTTGAGAGCGTCCGCTGAGAAGAATAGCTCAGATGGCGAGGAAGCGACGA
AGATGGTGATGAGGAAAGAAAAAAGCGGCTGGAAAATTGATTTTTCTGAA
GAGAAGCCACCAACACCATTGTTGGACACGATTAATTACCCAATTCATAT
GAAGAATCTCTCTACAGAGGATCTTGAACAACTGGCGGCAGAGCTTAGAG
CAGATATTGTTAACAGTGTATCAAAGACGGGTGGGCATCTTAGTGCAAAC
TTAGGAGTGGTGGAGCTAACACTTGCTTTGCATCGTGTTTTCAACACACC
TGACGATAAAATTTATATGGGGATGTTGGCCATCAGGCTTATGTACACAA
AATTTCTGACGGGAAAAAATTCCAAAATGAACACCTTGGAAGAAAAACTC
CGGGGCTTGGAAGGATTCCCCAAAAAAAAAGAAAAGCTTTCATGAAGCAT
TTTTGGGGGCAAAGGAAATAAATTCCCCCAAACCTCCCCGGCTGGGCCTT
GGTAAGGGCTGGCCCAAAGGGGAAAATTTCTGGGGGGAAAAAAAAAAATA
AATGGTCCTTTTTCCGTGGATTGGGAAATGGGGGCCAATGCTCGGCGAGG
AAAAAACCATATGAAACCGGATGAAAAATGGCAGGGATTTCCTTGGGAGC
GAACAACCCGGGAATTGTTTGGGGTTTGAAATGGATAAAAAAAAAACAAA
TTTTCTCTCTCCCCCCACCAACGCTCCCCACCCCTGGGGGGTGGGGGCCG
CGCGGCCCAACTTCCG
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