EY710039

Overview
NameEY710039
Unique NameEY710039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: AB3F_ARATH (ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.829e-62
Identity = 119/136 (87.50%), Postives = 126/136 (92.65%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            IISFSDASFGYPGGP+LF+NLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR+AVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR+HLGS GVTGNLALQPMYTL     SGG  SR  F
Sbjct:  503 IISFSDASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTL-----SGGQKSRVAF 633          

HSP 2 Score: 85.1149 bits (209), Expect = 5.546e-18
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  335 ILLFNRCTLCLDLDAVEALIQGLVLFQGGILMVSHDKHLISGSVEELWVVSKSKATPFLG 514
            +LL +  +  LDLDAVEALIQGLVLFQGGI MVSHD+HLISGSV+ELWVVS  +  PF G
Sbjct:  643 LLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHG 702          

HSP 3 Score: 27.335 bits (59), Expect = 5.546e-18
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  513 GTFHDYKKKLQS 548
            GTFHDYKK LQS
Sbjct:  702 GTFHDYKKLLQS 713          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: YB89_SCHPO (Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe GN=SPBC29A3.09c PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.414e-30
Identity = 73/151 (48.34%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 IISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-------FGCSGGTNSRPCFVPRRDSH 429
            I+  SD +F Y PG PIL K+++  + +DSRI +VGPNG GKST+LKL+  +L P+SG V R  ++RIA F+QHHVD LDL+ N L ++ + FPG  E++ R HLG+FGV+G LALQ M TLSG       F C G  N     +    +H
Sbjct:  517 ILQMSDVNFEYVPGHPIL-KHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNH 666          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 366
            ++ F + SFGY    +++KN++FG+DLDSR+A+VGPNG GKST+LKL+ GEL P+ G V R   ++IA + QH  + LDL    LLYMMR FPG  E+K+RA +G FG+TG   + PM  LS
Sbjct:  379 VLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVMPMKNLS 500          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: GCN20_YEAST (Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            II   D SFGY    +L K++N  + +DSRIA+VG NG GK+T+LK++  +L+P  G V R+ ++RI  F+QHHVD +DL+++ + +M + FPG  +++ R HLGSFG+TG L LQ M  L     SGG  SR  F
Sbjct:  531 IIQLQDVSFGYDENNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLL-----SGGQKSRVAF 661          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.257e-28
Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 369
            ++ F D  FGY G P +FK L+ GID+DS+IA+VG NG+GKST++KL+ G+L  ++G + RS K+R+A FSQH VD LD +  P+ Y    F   P Q++R HLG FG+  +L L  + TLSG
Sbjct:  922 LLVFKDVCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLMNGDLHETTGYIERSRKMRVARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRNHLGRFGICNSLPLHKITTLSG 1044          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: YJQ1_SCHPO (Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe GN=SPCC825.01 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.603e-26
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    4 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 366
            I F D SF YPGGP +F  LNFG+DL SR+A+VGPNG GK+T++KLI  ++QPS+G+V R   +R+A+F+QH  D LD+  + + ++   F   PE ++R  +G +G+TG   + PM  LS
Sbjct:  594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRHHGLRLALFNQHMGDQLDMRLSAVEWLRTKFGNKPEGEMRRIVGRYGLTGKSQVIPMGQLS 714          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF2_MOUSE (ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.984e-25
Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLS 366
            +I   + SF Y   GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + + + V+I  + QH  + LDL  +PL YMM+C+P + E +++R  +G +G+TG   + P+  LS
Sbjct:  400 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLS 523          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF2_HUMAN (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.984e-25
Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLS 366
            +I   + SF Y   GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + + + V+I  + QH  + LDL  +PL YMM+C+P + E +++R  +G +G+TG   + P+  LS
Sbjct:  395 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLS 518          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF2_BOVIN (ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.984e-25
Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLS 366
            +I   + SF Y   GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + + + V+I  + QH  + LDL  +PL YMM+C+P + E +++R  +G +G+TG   + P+  LS
Sbjct:  397 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLS 520          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ARB1_YEAST (ABC transporter ATP-binding protein ARB1 OS=Saccharomyces cerevisiae GN=ARB1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 57/126 (45.24%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE--QKLRAHLGSFGVTGNLALQPMYTLS 366
            +++F D SF Y   P   L+++LNFG+D+DSRIA+VGPNG+GKST+LK++ GEL P SG V R   V++ V+SQH  D LDL+ + L ++   +  + +  Q  R  LG +G+TG      M TLS
Sbjct:  392 VLAFDDISFHYESNPSENLYEHLNFGVDMDSRIALVGPNGVGKSTLLKIMTGELTPQSGRVSRHTHVKLGVYSQHSQDQLDLTKSALEFVRDKYSNISQDFQFWRGQLGRYGLTGEGQTVQMATLS 517          
The following BLAST results are available for this feature:
BLAST of EY710039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB3F_ARATH1.829e-6287.50ABC transporter F family member 3 OS=Arabidopsis t... [more]
YB89_SCHPO1.414e-3048.34Uncharacterized ABC transporter ATP-binding protei... [more]
AB1F_ARATH1.846e-3051.64ABC transporter F family member 1 OS=Arabidopsis t... [more]
GCN20_YEAST5.939e-2946.32Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20... [more]
ABCF4_DICDI2.257e-2848.78ABC transporter F family member 4 OS=Dictyostelium... [more]
YJQ1_SCHPO3.603e-2647.11Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF2_MOUSE3.984e-2545.16ATP-binding cassette sub-family F member 2 OS=Mus ... [more]
ABCF2_HUMAN3.984e-2545.16ATP-binding cassette sub-family F member 2 OS=Homo... [more]
ABCF2_BOVIN3.984e-2545.16ATP-binding cassette sub-family F member 2 OS=Bos ... [more]
ARB1_YEAST2.186e-2345.24ABC transporter ATP-binding protein ARB1 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-C02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710039 ID=EY710039; Name=EY710039; organism=Citrus sinensis; type=EST; length=885bp
ATAATAAGTTTCAGCGATGCATCATTTGGTTACCCTGGTGGGCCTATATT
ATTTAAGAATTTGAATTTTGGGATTGATTTGGACAGCCGGATAGCAATGG
TTGGGCCAAATGGGATCGGCAAATCAACTATACTCAAACTTATTGCTGGT
GAGCTACAACCAAGCTCTGGAACAGTTTTCCGTTCAGCTAAGGTTCGCAT
AGCTGTGTTCAGTCAGCACCATGTTGATGGGCTAGACCTATCTTCAAATC
CCCTCTTGTACATGATGCGCTGCTTCCCTGGGGTGCCTGAGCAGAAGCTT
CGAGCTCACTTGGGTTCTTTTGGTGTAACTGGAAATCTTGCTCTTCAACC
GATGTACACTTTGTCTGGATTTGGATGCAGTGGAGGCACTAATTCAAGGC
CTTGTTTTGTTCCAAGGAGGGATTCTCATGGTTAGTCACGACAAACATCT
GATATCTGGAAGTGTAGAGGAGCTATGGGTTGTATCAAAAAGCAAGGCGA
CACCATTCCTTGGGGACGTTCCACGATTACAAAAAAAAGCTTCAGTCCCG
TTAAATAATAAAAAGGTTAATTGGCGGAAAATCAAAGGGAATTTTAGACC
TTACAAATACAAAAAAATTAAATTTTTTCCCAAATTAAACTGAATGGGAA
AAAACAATCCAATTTAAGCAATTAAAAAAAAATGTTTTTTTTCAAGAAAA
AAGCTTTGGAGGGGAACTTTTCTGCCCCACTCCTTGCCAAAGGAATTTTT
ATTTTATTTTTTTTTTTTAATAGAATCCAAAAAAAAAATTATTATAATAC
CATAAAATTTAAACATCAAATATACCCTCATAGAAAAAAAAAAAAAAAAA
AAGGGGGGGCCGCCTCCAAAAAAAAATCACGACGA
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