EY710027

Overview
NameEY710027
Unique NameEY710027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 3.216e-78
Identity = 138/162 (85.19%), Postives = 149/162 (91.98%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENAN-GKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MI LFKVKEKQRE A+NA  G   VKKQSAGELRLH+DISELNLP +CSI+FPNGKDDLMNFEVSI+PD+GYY  GTFVFTFQVSP+YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLFHLFT+PN EDPLNH+A AVL +NPKLF
Sbjct:    1 MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLF 162          

HSP 2 Score: 23.483 bits (49), Expect = 3.216e-78
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  535 FESNVKKTMAGEIVGENLLIRGI 603
            FE+NV++ M G  VG+    R I
Sbjct:  162 FETNVRRAMTGGYVGQTFFPRCI 184          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 7.060e-76
Identity = 133/163 (81.60%), Postives = 150/163 (92.02%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGK--TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MI LFKVKEKQRE +++ NG+  + VKKQSAGELRLH+DISELNLPK+C I+FPNGK+DLMNFEV+I+PDEGYY+ G FVF+FQVS +YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLFHLFT+PNYEDPLNHEA AVL +NPK F
Sbjct:    1 MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTF 163          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.431e-53
Identity = 101/161 (62.73%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I F +  DDL+NF++ I PDEG+Y GG FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EA  VL  N +LF
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 160          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.431e-53
Identity = 101/161 (62.73%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I F +  DDL+NF++ I PDEG+Y GG FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EA  VL  N +LF
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 160          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.871e-52
Identity = 100/161 (62.11%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F +  DDL+NF++ I PDEG+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EA  VL  N +LF
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 160          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.871e-52
Identity = 100/161 (62.11%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F +  DDL+NF++ I PDEG+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EA  VL  N +LF
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 160          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.871e-52
Identity = 100/161 (62.11%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F +  DDL+NF++ I PDEG+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EA  VL  N +LF
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 160          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.570e-50
Identity = 94/161 (58.39%), Postives = 121/161 (75.16%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            MIKLF +K+++++  +  + +   KK SA +LR+ +DI+ELNLP TC+  FP+  +DL+NF++ I PDEG+Y  G FVF F+V   YPHE PKVKC T+VYHPNIDL+GNVCLNILREDW PVLNIN+I+YGL  LF +PN EDPLN EA  VL  N + F
Sbjct:    1 MIKLFTLKQQKKDGEQKGSQQ---KKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQF 157          

HSP 2 Score: 25.409 bits (54), Expect = 5.570e-50
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  535 FESNVKKTMAGEIVGE 582
            FE+NVKK M G  VGE
Sbjct:  157 FENNVKKAMRGGCVGE 172          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.299e-45
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            M+K++ +KEKQ      A G +  KK +A +LR+ +D+SEL+LP T    FP+  +D+MNFE+++RPDEG+Y GG F F+F V+P +PHE PKVKC  KVYHPNIDLEGNVCLNILREDWKPVL++N ++ GL +LF +PN  DPLN +A   +  N + F
Sbjct:    1 MLKIWSMKEKQA-----AEGGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSA-EDIMNFELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEF 155          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.643e-40
Identity = 80/162 (49.38%), Postives = 116/162 (71.60%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNG-KDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            M K++++K+K+ +  +NA+G +P       ++R+ +D+++L +P T S ++P+  K ++++ E  IRPDEGYY GG F F  Q+   YPH+ PKVKC  K+YHPNID+EGNVCLNILR+DW PVLN+N+I+ GL  LF  PN EDPLN EA A L ++P+ F
Sbjct:    1 MRKIWELKKKEAQKEKNASGISPA------QIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE--IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGF 154          
The following BLAST results are available for this feature:
BLAST of EY710027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RCE1_ARATH3.216e-7885.19NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH7.060e-7681.60Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_XENTR6.431e-5362.73NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA6.431e-5362.73NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE1.871e-5262.11NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN1.871e-5262.11NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN1.871e-5262.11NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_DROME5.570e-5058.39NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_YARLI1.299e-4554.66NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_SCHPO1.643e-4049.38NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-B01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710027 ID=EY710027; Name=EY710027; organism=Citrus sinensis; type=EST; length=942bp
CGACTCGACCAAGAAGAACAAATCTCCTGCAGCTTCACTCTTAAGCAGGA
AAAATGATTAAGCTGTTCAAAGTCAAGGAGAAGCAAAGGGAAAATGCCGA
AAATGCCAATGGGAAGACACCTGTCAAGAAGCAAAGTGCTGGAGAATTGC
GTCTTCATAGAGACATCAGTGAACTGAACCTACCCAAAACTTGCAGCATA
ACATTTCCCAATGGCAAGGATGACTTGATGAACTTCGAGGTTTCCATTAG
GCCTGACGAAGGATATTATGTAGGTGGTACATTTGTGTTTACTTTCCAAG
TATCTCCCATCTACCCTCATGAGGCACCAAAGGTCAAATGCAAGACAAAG
GTGTACCACCCCAATATCGACCTGGAGGGAAATGTCTGCCTCAACATTTT
AAGAGAAGACTGGAAACCGGTTCTGAATATAAACACCATCATTTATGGAC
TCTTCCATCTTTTCACGCAACCCAATTATGAAGATCCCCTCAATCATGAA
GCACCAGCTGTTTTAGGGGAAAACCCAAAACTGTTTTGAATCCAATGTAA
AAAAAACAATGGCTGGTGAAATTGTGGGGGAAAACCTTCTCATTCGGGGC
ATATAATTTGCTTGGGCCCTGAAAAGCATGTTTGTTTGAAGGGAAAGGAC
CTGTAAATTTGGCCCCAGGGCTGCTTTCTTTTCTAAAAAGGGGTGGGGAC
AAAAATTTCTAAAATACGGCAAAGGGGGGCCAAAATGTTTGGTAGCCGGG
TGAACTTTGTGTGGGGGGGTTGGGATATTGGGCGGAAAACAAAATTTATT
TCCCTTTATTTTCTCGGGAAAATCCAAGGGGGGGGAGCCTCCAGAACCCC
GGCACTTTTGTAAAATTATATACCGGGGGCTATTTTTTTTTTTTTTTTTA
GGGGGGGGGGGGGGGAAAAAAGGATCTTTTATTTTTAGTTTT
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