EY709990

Overview
NameEY709990
Unique NameEY709990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1074
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.133e-66
Identity = 110/141 (78.01%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    7 SRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 429
            SRN   L VNK GIAWKSD++HKFG +VFP NFQ G + GGA L+  IPLS+QEDLIVWMRTAALPTFRKLYGKIE DLE  D I V L NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVGG+CF LAL+FTI+Y
Sbjct:  187 SRNNVSLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFTIMY 327          

HSP 2 Score: 46.2098 bits (108), Expect = 4.133e-66
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2
Query:  431 LVKPRRLGDPSYLAWNRNPRG 493
            LVKPRRLGDPSYL+WNRNP G
Sbjct:  328 LVKPRRLGDPSYLSWNRNPGG 348          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 7.028e-66
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    7 SRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 429
            SRN + LTVNK GIAWKSD++HKFGK VFP NFQ G L GGA L+ + PLS QEDLIVWMRTAALPTFRKLYGKIE DLE+ + I V L+NNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGG+CF LAL+FT++Y
Sbjct:  188 SRNNQGLTVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFTVMY 328          

HSP 2 Score: 41.5874 bits (96), Expect = 7.028e-66
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  431 LVKPRRLGDPSYLAWNRNPRG 493
            LVKPRRLGDP+YL+WNR P G
Sbjct:  329 LVKPRRLGDPTYLSWNRIPGG 349          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 3.147e-63
Identity = 105/147 (71.43%), Postives = 126/147 (85.71%), Query Frame = 1
Query:    4 FSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYPGKAK 444
            F+RN ++L VNK  I+WKSDR+ KFGK VFP NFQ G+LIGG  L++ IPLS+QEDLIVWMRTAALPTFRKLYGKI+ DL+  D I V+L+NNYNTYSF+GKKKLVLSTTSWLGG+NDFLGIAYLTVG +C FLA+SF+++Y  K +
Sbjct:  189 FTRNNQKLPVNKKDISWKSDRESKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPR 335          

HSP 2 Score: 38.1206 bits (87), Expect = 3.147e-63
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  431 LVKPRRLGDPSYLAWNRNPRG 493
            L KPR+LGDPSYL+WNR+  G
Sbjct:  331 LAKPRQLGDPSYLSWNRSAGG 351          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.147e-63
Identity = 106/143 (74.13%), Postives = 122/143 (85.31%), Query Frame = 1
Query:    1 TFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 429
            +FSRN +QL VNK GI+WKSDR++KFGK VFP NFQ G  IGG  LN S PLS+QEDLIVWMRTAALPTFRKLYGKIE DL   D I V+L+NNYNTYSF+G+KKLVLSTTSWLGG+NDFLGIAYLTVG +C FLA++F ++Y
Sbjct:  185 SFSRNSQQLLVNKKGISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFAVLY 327          

HSP 2 Score: 39.6614 bits (91), Expect = 3.147e-63
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  431 LVKPRRLGDPSYLAWNRNPRG 493
            LVKPR+LGDPSYL+WNR+  G
Sbjct:  328 LVKPRQLGDPSYLSWNRSAGG 348          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 6.212e-50
Identity = 92/143 (64.34%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    1 TFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 429
            TFSR + +L V++N IAWKSDR+HKFGK V+P NFQNGTLIGGA L+  IPLS QED IVWMR AAL +FRKLYG+IE DLE   +++V L NNYNTYSFSG+KKL+LST++WLGG+NDFLGI YL VG     +++ F +++
Sbjct:  182 TFSRERTKLNVSRNNIAWKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLH 324          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.884e-22
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   25 LTVNKNGIAWKSDRDHKFGKEVFPSN----FQNGTLIGG----AHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIEVDLEENDIID-----VILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 429
            +T+ K GIAW +D++ KF       N    FQ  T         ++ +S P +     ED IVWMRTAALPTFRKLY  IE        +      + +  NY  +SF G+K+++LST SW+GGKN FLGIAY+TVG +CFFL +   I++
Sbjct:  208 ITLIKKGIAWWTDKNVKFRNPKGDGNLTALFQGTTKPVNWPKPVYMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSNLQPTLQAGKYSLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLGVVLLIIH 358          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: CC50A_MOUSE (Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.914e-21
Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = 1
Query:   25 LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTLIGGAHL--------NESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVI--------LENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 426
            + + K GIAW +D++ KF    GKE     F++       H         +ES      ED IVWMRTAALPTFRKLY  IE     +D+   +        +  NY  +SF G+K+++LST SW+GGKN FLGIAY+T+G + F L +   ++
Sbjct:  199 IPLKKKGIAWWTDKNVKFRNPPGKESLEEKFKDTIKPVNWHKAVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLIE---RRDDLHPTLPAGQYFLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 349          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: CC50A_RAT (Cell cycle control protein 50A OS=Rattus norvegicus GN=Tmem30a PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.303e-20
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   25 LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTLIGGAHL--------NESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIID-----VILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 426
            + + K GIAW +D++ KF    GK+     F++ T     H         +ES      ED IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+T+G + F L +   ++
Sbjct:  163 ILLKKKGIAWWTDKNVKFRNPPGKDSLQEKFKDTTKPVNWHKPVYELDPDDESNNGFINEDFIVWMRTAALPTFRKLYRLIERTDDLHPTLPAGQYYLNITYNYPVHFFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 313          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: CC50A_PONAB (Cell cycle control protein 50A OS=Pongo abelii GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.699e-20
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   25 LTVNKNGIAWKSDRDHKFG--------KEVFPSNFQNGTLIGGAHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIEVDLEENDII-----DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 426
            + + K GIAW +D++ KF         KE F    +    +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+ VG + F L +   ++
Sbjct:  197 IALKKKGIAWWTDKNVKFRNPPGGDNLKERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVI 346          
BLAST of EY709990 vs. ExPASy Swiss-Prot
Match: CC50A_HUMAN (Cell cycle control protein 50A OS=Homo sapiens GN=TMEM30A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.492e-19
Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:   25 LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTL----IGGAHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIEVDLEENDII-----DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 426
            + + K GIAW +D++ KF    G +     F+  T     +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+ VG + F L +   ++
Sbjct:  197 IALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVI 346          
The following BLAST results are available for this feature:
BLAST of EY709990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ALIS3_ARATH4.133e-6678.01ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH7.028e-6678.72ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH3.147e-6371.43Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS5_ARATH3.147e-6374.13ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS2_ARATH6.212e-5064.34Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
CC50A_CHICK1.884e-2242.38Cell cycle control protein 50A OS=Gallus gallus GN... [more]
CC50A_MOUSE7.914e-2139.61Cell cycle control protein 50A OS=Mus musculus GN=... [more]
CC50A_RAT2.303e-2039.07Cell cycle control protein 50A OS=Rattus norvegicu... [more]
CC50A_PONAB6.699e-2038.00Cell cycle control protein 50A OS=Pongo abelii GN=... [more]
CC50A_HUMAN1.492e-1938.00Cell cycle control protein 50A OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-022-F10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709990 ID=EY709990; Name=EY709990; organism=Citrus sinensis; type=EST; length=1074bp
ACTTTTTCCCGCAACAAGAGACAGTTGACAGTGAACAAGAACGGTATCGC
ATGGAAGAGTGATAGGGATCACAAGTTTGGCAAAGAAGTTTTTCCTAGTA
ACTTCCAAAATGGGACTCTGATAGGTGGTGCACATCTTAATGAATCCATA
CCATTGAGTAAGCAAGAGGACCTTATAGTTTGGATGCGGACAGCAGCTTT
GCCCACTTTTAGGAAGTTGTATGGGAAAATAGAGGTGGATCTCGAAGAGA
ATGATATTATAGATGTGATATTGGAAAACAACTACAACACGTACAGTTTT
AGTGGCAAGAAGAAGCTTGTTCTTTCAACCACTAGCTGGCTTGGTGGAAA
GAACGACTTCCTTGGCATTGCTTATCTCACCGTTGGAGGCTTGTGCTTCT
TTTTGGCCCTGTCATTCACTATAGTATATCCTGGTAAAGCCAAGGCGACT
TGGAGATCCTTCCTACCTGGCATGGAACAGAAATCCAAGAGGGCACTTAA
CCAAATTTCTGGAACCTGAGTAAATGGATTGGCTATCTCAAAAGTGGTTG
ATGTAATTTTGTGTACCGGTATTTTAATGAAAAAATATCCCCTCTGGTTA
AAAAAAATATCTGGTTTGTTTTATTGAATTTTTGGGAAAAAAGGAAGGTG
GTCCCGGGGGAACCTTAAGTAAAAATTTGGGAAATAACTCCAAAAACAAT
AAACTATTTTTTCCCTCAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGCGGCGCCCCCTAGAAAGAACCAAAGATTACA
ATACACGGTGGCGGGGGAAAAACCAAATAACTCTTCTATTTGGGGCCCCC
AAAAAATTTGATATTTCCGGGGGGGGGCCCGTTTTAATCAAACGCGCATA
GGGGGGGGGGAAAAAACACGTTGGGGGTTAACCCCATCACATTGTATCCT
CCTCCCTTGGACAAGCACCCACCACCCCCCCTTTTATTTCCCTCCCACAG
GGCGGGAATGAATGAATATTTATAAAAAGAAGAAAAAGAGGCAACCCCCC
CCCCTCCCGCACCCACATAATTCG
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