EY683449

Overview
NameEY683449
Unique NameEY683449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.553e-44
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +I+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  154 AKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.303e-43
Identity = 78/85 (91.76%), Postives = 84/85 (98.82%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + +I+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  154 SKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.143e-42
Identity = 78/85 (91.76%), Postives = 83/85 (97.65%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + +I+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  154 SKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.493e-42
Identity = 77/85 (90.59%), Postives = 82/85 (96.47%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + +I+PSGCR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  154 SKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.467e-37
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + +I+PS CRAMIGQVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:  155 SKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.036e-35
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +++PS  RAMIG VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  154 AKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.146e-34
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  154 AKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.267e-33
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +++PS  R ++G VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HPHGGGNHQH+GH++TV R + PGQKVGLI
Sbjct:  153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.654e-33
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +++ S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  154 AKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.072e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +++PS  RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  154 AKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
The following BLAST results are available for this feature:
BLAST of EY683449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL8_SOLLC3.553e-4494.1260S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH2.303e-4391.7660S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH1.143e-4291.7660S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_TOBAC1.493e-4290.5960S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH2.467e-3782.3560S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA1.036e-3578.8260S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL1.146e-3476.4760S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL2_SCHPO1.267e-3370.5960S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_CAEEL1.654e-3376.4760S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_DROME1.072e-3274.1260S ribosomal protein L8 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-050-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683449 ID=EY683449; Name=EY683449; organism=Citrus sinensis; type=EST; length=847bp
CCACGCGTCCGAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGG
TTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCA
TACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGT
GGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACA
TTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTT
GGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGC
CACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATC
GTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCT
TGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAAAT
TATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAGTT
GATTTTGAAAAAAAAAAAAAAAGGGCGCCACGCACCGTGATCACACCGAG
AAAGATACACATCACAGAAGCAAATAAACACATCTAAACCAGTGCACTAA
CGCGAAATATAACATGCACTCTATTCAAATTCTGTTGAATACCTGACACG
CTAGATATTTCACCACTACGTGAGTCAGACGAACCCTCAATCCGAATAAC
AAAACCATCCCTTGCACTATTTGTACCCTAAGGGTAAAAGTGTGAGTGTA
TACCTAGTCCTCCTTCCGCCAGCATACGCCGGGCGAGGACAGCTGAGCCG
AAGCCCGCGCAGCCGGGCTGTTGGCTTGATGAAAGAGTCCTGGGGCG
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