FC922579

Overview
NameFC922579
Unique NameFC922579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC922579 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.778e-25
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 3 
Query:    3 GLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQALDLEPNGFSFDGADIAGVDYALNR 188
            GLTQL AMRYGSIPVVRKTGGLYDTVFDVDHDKERAQ   LEPNGFSFDGAD  GVDYALNR
Sbjct: 1125 GLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLEPNGFSFDGADAGGVDYALNR 1186

HSP 2 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 3 
Query:  474 RAISAYYDGREWLNSLCKTVMEQDWSWNRPALDYMELYRAARK 602
            RA+SA+YDGR+W NSLCK VMEQDWSWNRPALDY+ELY AARK
Sbjct: 1186 RALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARK 1228
[Close]
BLAST of FC922579 vs. ExPASy Swiss-Prot
Match: GLGA_PARUW (Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:    3 GLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQALDLEPNGFSFDGADIAGVDYALNR 188
            GLTQ++A++YG++P+VR+TGGL DT+ DVDH  ++      + NG+ FD  D  G+D A++R
Sbjct:  399 GLTQIIALKYGTVPIVRRTGGLADTIIDVDHTDQQPD----KKNGYVFDDPDANGIDSAIDR 456
The following BLAST results are available for this feature:
BLAST of FC922579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSY3_SOLTU1.778e-2590.32Soluble starch synthase 3, chloroplastic/amyloplas... [more]
GLGA_PARUW9.473e-1146.77Glycogen synthase OS=Protochlamydia amoebophila (s... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AB06RM1 SLH Citrus sinensis cDNA clone KN0AAM1AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922579 ID=FC922579; Name=FC922579; organism=Citrus sinensis; type=EST; length=884bp
GTGGACTGACACAACTTGTGGCTATGAGATATGGTTCAATACCAGTGGTT
CGGAAAACTGGAGGACTTTATGACACTGTATTTGATGTTGACCATGATAA
AGAGAGAGCACAAGCCCTAGATCTTGAACCAAATGGATTTAGTTTTGATG
GAGCTGATATTGCTGGAGTCGATTATGCTCTTAATAGGTGAGTGAATCTA
TTTCCTGTTCAAGTAAGTCGGCAAATCTACTTTTCTTAAGCGGTAGTCAT
GTAGTTGATTTCAGCATCCATGTTTCTTCATTCCATACTACAAGTAGATT
ATATATTTATGAGGATCTAGAAGGTCAGCCACTTATGATCCCTTTTAAAC
AAAAGCAATCCAGTATGACTTATGACAGTTTCAGGTTTGTCTAGAGCAAG
CATTTTAAATTTGCTGGTATTTCCATTAGTATTGTGTTCCTTTGTATAGC
ATTCATTTGGAAATTGATTTTTCAGGGCAATTTCTGCTTATTATGATGGT
CGAGAGTGGTTGAACTCATTATGCAAGACAGTGATGGAGCAAGACTGGTC
TTGGAATCGCCCTGCTCTTGACTATATGGAGCTTTACCGTGCAGCACGCA
AGTGAAATAAGATATTGATCGGGTGGAGAGAACGCGATGCAGCTCATTCC
CATCACACAGTTTGTACAGGTTCAGTGGGATATCTTGTTTGAATATTAAC
TGCATATAGTTCACCCAAGTTGGAATTATATAAGTTCACCCCGAGGCACT
GTAGAGCTTAATGATGGTTCATCAATTTTCATGTAGCATAAAACATTACG
CCAGCTTTATAATTTATTATTTCTTAATCGCTGTACATCATGCCTATGAA
GAAGAATAAGAAAACGTATCGGTAGTAAAAGAAA
back to top