EY709059

Overview
NameEY709059
Unique NameEY709059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY709059 vs. ExPASy Swiss-Prot
Match: PUB44_ARATH (U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 63/230 (27.39%), Postives = 110/230 (47.83%), Query Frame = 2 
Query:   14 QWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAA------EAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSR-PIPKRKG-----FWCFSPPPKIG--CQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIE-GERLQNGSKVLEDANAIXRMVRFL-SSPSPKLQEKALDSVERIFRLPELNKNTGD 652
            Q +L+ GA   +++ +   RQ D    + V   +  L R  A     + K A       E  V    + LL+  G    +  +A +L   S  S+ L+R P P         F C   P  +   C++H G+C +  +FCL+E  AV  LV +L+  +    EA+L AL +L+E G  ++ G K+L++A+ I  ++  L  + + +L  +A+  VERI R+ ++ +   +
Sbjct:  528 QEMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHVVNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHILNVLRENRTERLTRRAVWMVERILRIEDIAREVAE 757
The following BLAST results are available for this feature:
BLAST of EY709059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUB44_ARATH4.741e-1227.39U-box domain-containing protein 44 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-105-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709059 ID=EY709059; Name=EY709059; organism=Citrus sinensis; type=EST; length=855bp
CCACGCGTCCGCTCAGTGGCTTCTGGATGCCGGTGCACTTCCGATTGTTT
TAAATTTTCTGAAAAATGGAAGGCAGAATGATCCAAATAGATTTCAAGTC
GTTGAAAATGCTGTTGGAGCCTTACGGCGTTTCACTGCTCCGACAAACTT
GGAATGGCAAAAGAGAGCAGCTGAAGCTGGTGTTATTCCCAAGTTGGTTC
AGTTACTAGAGTATGGAACCACCCTGACAAAAGAACATGCAGCCACGTCT
CTTGCTCGTTTTTCAAAAAATTCCCTTGGGCTAAGTCGACCAATACCGAA
GCGTAAGGGGTTCTGGTGTTTCTCACCTCCACCAAAAATTGGCTGCCAGG
TTCATGGAGGATTATGTGGCATTGAATCATCTTTTTGCCTTTTGGAGGCT
AATGCAGTTAGACCACTTGTTAGGGTTCTTGAAGATCCAGATCATGGGGC
CTGTGAGGCTTCTTTAGATGCATTAGTAACATTAATTGAAGGTGAAAGAC
TACAGAATGGCAGCAAGGTGCTTGAAGATGCAAATGCCATANACCGTATG
GTAAGATTTCTTAGTTCACCCTCTCCAAAATTGCAGGAGAAGGCTCTGGA
TTCTGTAGAAAGGATTTTCCGACTGCCAGAGTTAAACAAAAATACGGGAG
ATCTGCTCAGATGCCGGTGGTCCACTTACACAACGAAGGCACAGTAGATT
AAGGCCCTTTCGCCCGGAGACTGGCTCATTTGAATGGGCCCGAGATGGGG
CGTCGTGGTTCTAAAAAGTTGTGGAAGGTGAACCAATTTAATTTTATTAA
AATTTTTGCCTTGAAAGAAAATGAATGAGACCCTCCCTTGAGTGTTTCCA
GAGGG
back to top