EY745118

Overview
NameEY745118
Unique NameEY745118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY745118 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.103e-19
Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 3 
Query:   12 LDKGMSRYVLVVYAHAFATLATAVLAILFERKNKSKITKSILRDIFFLGLLGAMLGRTLFFAGLEYTSTTFASAMANIIPSITFILAVAFRMERLDISKLSAQAKIAGTLVALGGAILSTLYKGIVVISAHRRHGNQTDGISKVFLDG-------NWIKGSLMLFISYLSLAAFFIVQTWTIKKYPA 551
            L+ G+S+ V  VY +  A +     A   E+K +  +T S L   F L L G      +    +     TFASA+ N +P+ITFI+A A R+E++ IS+    AKI GT+  + GA + TLYKG  +    R +   T    K F          NW  G + L  + L+ + + ++Q   +K+YPA
Sbjct:   41 LNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPA 227
The following BLAST results are available for this feature:
BLAST of EY745118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA3.103e-1932.09Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-026-B04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY745118 ID=EY745118; Name=EY745118; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGCTGGATAAAGGCATGAGTCGCTATGTTCTTGTGGTTTAT
GCTCATGCTTTTGCCACTTTGGCTACTGCTGTTCTTGCAATTCTTTTTGA
GAGGAAAAACAAAAGTAAAATCACCAAATCCATCTTGCGAGACATTTTCT
TCCTTGGTCTACTAGGTGCCATGTTGGGCAGGACGCTTTTCTTCGCTGGC
CTAGAGTACACTTCAACAACTTTTGCATCAGCCATGGCCAATATTATTCC
ATCCATTACATTTATCTTGGCAGTTGCGTTTAGAATGGAAAGATTAGACA
TATCCAAACTTAGTGCCCAAGCAAAGATTGCAGGGACTCTCGTTGCCTTA
GGTGGAGCAATTCTTTCAACTTTGTACAAGGGCATTGTAGTAATTTCAGC
ACATCGTCGGCATGGAAATCAGACTGACGGCATTTCAAAAGTGTTCTTGG
ACGGGAATTGGATAAAAGGCTCTCTCATGCTCTTCATTTCATACCTTTCA
CTTGCAGCTTTCTTTATCGTACAGACATGGACAATAAAGAAGTATCCAGC
CACCCATAACTCTTACATCATTACCGTGCTTGGCAGGAATTTTATTTGCA
GCAATCATTGGGGGCAATTTTTGATCATAAAACTGGCTTCATGGGAAATT
GGCATGGAAAAATTACCCTTCTGGGCTCCTATTTATTTCTGGGAATTGAA
GTCCTTTGGAAACCACAAGGGTAGGCCCCAACATTTGGACAAAAAAAAAA
AAAGGGGTCCCCCCTTTCCATGCAGGGGGTTTTAAGGCCCTGCCTACGCC
GGCTGTTGTGAACCACCACCGTGGGAGGAAATTTTTTTGGGGAAAAAGAA
AACCTGCCCCACGGAGAAAAAAAATCCCGCGATGACACAACACGCGGTGT
ATGACATTTGGCACTTGGAAAATGGACCTTTTTGTGCGGGACACAAAGAG
AGGCCCCACCAAAATACAATACAACAAAACAAAAAATGCGAACCCCGTGA
ACCATTTCTCCAATTTGCAACAACACCT
back to top