FC922559

Overview
NameFC922559
Unique NameFC922559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922559 vs. ExPASy Swiss-Prot
Match: IMB1_MOUSE (Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.083e-33
Identity = 81/198 (40.91%), Postives = 108/198 (54.55%), Query Frame = 2
Query:    2 DICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 580
            D+CRAL+  ILP+CD +M  LL++L +  +HRSVKP I S FGDIALAIG  F+KYL   +  LQ A+   A     D DM +Y N LR   LEAY+GI QG K       P   L+ P    IL F+D +  ++D  + V+  A GL+GDL    G +   L++      + L E   SK +  K  A WA   + K
Sbjct:  676 DLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDFDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871          
BLAST of FC922559 vs. ExPASy Swiss-Prot
Match: IMB1_HUMAN (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.208e-32
Identity = 80/198 (40.40%), Postives = 108/198 (54.55%), Query Frame = 2
Query:    2 DICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 580
            D+CRAL+  I+P+CD +M  LL++L +  +HRSVKP I S FGDIALAIG  F+KYL   +  LQ A+   A     D DM +Y N LR   LEAY+GI QG K       P   L+ P    IL F+D +  ++D  + V+  A GL+GDL    G +   L++      + L E   SK +  K  A WA   + K
Sbjct:  676 DLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871          
BLAST of FC922559 vs. ExPASy Swiss-Prot
Match: IMB1_RAT (Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.061e-32
Identity = 80/198 (40.40%), Postives = 107/198 (54.04%), Query Frame = 2
Query:    2 DICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 580
            D+CRAL+  ILP+CD +M  LL++L +  +HRSVKP I S FGDI LAIG  F+KYL   +  LQ A+   A     D DM +Y N LR   LEAY+GI QG K       P   L+ P    IL F+D +  ++D  + V+  A GL+GDL    G +   L++      + L E   SK +  K  A WA   + K
Sbjct:  675 DLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDITLAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDFDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 870          
BLAST of FC922559 vs. ExPASy Swiss-Prot
Match: IMB_DROME (Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 75/198 (37.88%), Postives = 111/198 (56.06%), Query Frame = 2
Query:    2 DICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKT-----QLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 580
            DI RAL++ ++PY + IMT L+ +L+   +HR+VKP + S FGDIAL+IG +F  YL   + ML+ A++L     N   DM EY N LR  ILEAY+GI QG K   +T       + P+  HI+ F+  +  E D+ + ++ +A G +GDL  + G     L+  ++ ++ FL E   SK    K    WA   I K
Sbjct:  682 DIFRALKDLMVPYSNEIMTVLINNLTEPTIHRTVKPQVLSAFGDIALSIGNHFLPYLSMVLDMLRVASNLQTDANNF--DMNEYINELRESILEAYTGIIQGLKGVDQTAHTDVMHMEPHLMHIISFIKRIAQEGDVSDSMLASAAGFIGDLCTSFGPRLYPLLDDAIITQ-FLAEGKRSKAQRTKMLCTWAVKEIKK 876          
BLAST of FC922559 vs. ExPASy Swiss-Prot
Match: IMB1_SCHPO (Importin subunit beta-1 OS=Schizosaccharomyces pombe GN=kap95 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.058e-28
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 2
Query:    2 DICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSS-----KDHMIKESAEWA 562
            D+ RAL  KILPYCD  MT+L++DL S+ L R+VKP I SCF DIALAIG  F+ YL   M +LQ A+ + A     +  M +Y ++LR GI+EAY GI Q  +   +  L+ PY   +   L+ +  + +  E + + A+GLLGDLA++     G L  +S  + D++   L+S          K+ A WA
Sbjct:  667 DLARALNAKILPYCDDFMTRLVQDLQSSVLDRNVKPAILSCFSDIALAIGAAFQTYLEAVMVLLQQASSVQA-PPGANFSMIDYVDALRLGIVEAYVGITQAVRTDNRLDLIQPYVHSMFTLLNMITADPECSESLTRAALGLLGDLAESFPK--GEL--KSYFAADWVAALLNSGKTKISSQQTKDLARWA 853          
BLAST of FC922559 vs. ExPASy Swiss-Prot
Match: IMB1_YEAST (Importin subunit beta-1 OS=Saccharomyces cerevisiae GN=KAP95 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.639e-14
Identity = 54/201 (26.87%), Postives = 92/201 (45.77%), Query Frame = 2
Query:    2 DICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDM--DELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSK--DHMIKESAEWARLAINKAISV 592
            DI  +LEE    Y D +M  L + +S+    R +KP + S FGDIA  IG +F  YL   M +  +A +       +  +  +Y   +   +L+AY GI  G  + P  + L PY   I QF+  +  +  +  ++   + A+GL+GD+A      +           D++    S +      K++A WAR    + +S+
Sbjct:  665 DISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTL--EALDYQIKVLEAVLDAYVGIVAGLHDKP--EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLSL 861          
The following BLAST results are available for this feature:
BLAST of FC922559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IMB1_MOUSE7.083e-3340.91Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 P... [more]
IMB1_HUMAN1.208e-3240.40Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 P... [more]
IMB1_RAT2.061e-3240.40Importin subunit beta-1 OS=Rattus norvegicus GN=Kp... [more]
IMB_DROME6.205e-2937.88Importin subunit beta OS=Drosophila melanogaster G... [more]
IMB1_SCHPO1.058e-2839.58Importin subunit beta-1 OS=Schizosaccharomyces pom... [more]
IMB1_YEAST5.639e-1426.87Importin subunit beta-1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2CH06RM1 SLH Citrus sinensis cDNA clone KN0AAM2CH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922559 ID=FC922559; Name=FC922559; organism=Citrus sinensis; type=EST; length=771bp
GGATATTTGCAGAGCCCTGGAGGAAAAAATTCTGCCTTACTGTGATGGGA
TTATGACACAACTTCTCAAAGATTTATCAAGCAACCAGCTACACCGTTCT
GTGAAGCCACCTATATTCTCATGCTTTGGTGACATAGCACTTGCAATTGG
AGAGAACTTTGAAAAGTACTTGATGTATGCCATGCCCATGCTCCAGAGTG
CAGCCGATTTGTCAGCGCACACGGCAAATGTAGACGATGATATGACTGAG
TACACCAATTCTCTGAGAAATGGGATTTTGGAGGCATATTCTGGGATTTT
CCAAGGGTTTAAGAACTCTCCAAAAACCCAGCTCTTGATTCCATATGCAC
CCCATATCCTCCAGTTCTTGGATAGCATGTACATGGAAAAAGACATGGAT
GAACTGGTCATGAAGACAGCAATCGGGCTTCTTGGAGATCTAGCAGATAC
ACTGGGAAGCAATGCAGGTTCTTTGATTCAGCAGTCGCTTACAAGTAAAG
ACTTTTTAAATGAGTGTTTATCTTCAAAAGATCATATGATTAAAGAATCT
GCTGAATGGGCAAGGTTGGCGATTAATAAGGCCATTTCTGTTTGAGGCTA
TTGGGCATGGTCTGTCCTTCTAACGAGTCCCTGCATGCATTTGGGTCTGT
TGAGTCAGGGTAAAGGGTTGCATGTGTCAGGTCATCATCACATTTAGACA
ACAGAAGTTATCAATCTTCAAGTTGTCACTAACTCTTGCATCAGCCCATG
GGAATTGGGGTGTTCTTTGGC
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