EY708647

Overview
NameEY708647
Unique NameEY708647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY708647 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19
Identity = 58/188 (30.85%), Postives = 93/188 (49.47%), Query Frame = 3
Query:    9 PLEVIIYSLKADTWRRTRE----------FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGG---FCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRNGNQSF 530
            P EV ++SLK ++W+R             F Y++L  R  GV    +LHW+  R       N+I+ FDL  E+F  V+ P  +  G       +GVL GCL +   Y D+   D+W+MKEY  + SW+K+ +  K      + Y     +SKD  K L+  ++  L W++L+  K   + I++   S+
Sbjct:  172 PYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNY-DQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSY 358          
BLAST of EY708647 vs. ExPASy Swiss-Prot
Match: FBK50_ARATH (F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   12 LEVIIYSLKADTWRRTREFPYYILDDR-CNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQ------VGVLRGCLWI-NSYY--HDEPRCDIWVMKEYGSQQSWSKL 359
            L+  +YSLKAD+WRR     Y   D    +GV   GA+HW+      R  Q +++AFD+++E+F E+  P   +   CS       VG L G L + NS Y  HD    DIWVM EYG  +SWS++
Sbjct:  238 LDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTES--RHNQRVVVAFDIQTEEFREMPVPDEAED--CSHRFSNFVVGSLNGRLCVVNSCYDVHD----DIWVMSEYGEAKSWSRI 355          
BLAST of EY708647 vs. ExPASy Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 49/170 (28.82%), Postives = 81/170 (47.65%), Query Frame = 3
Query:    9 PLEVIIYSLKADTWRRTR----------EFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLH-ETCYYTEAFAFSKDGDKALI-YQHSRCLHWYNLK 482
            P+EV ++SLK ++W+R             + Y++L  R  GV +   LHW+  R       N I+ +DL S+    +  P  +       +GVL GC+ +  Y  +    D+WV+KEY   +SW+KL    K    E+  +      SKD  K L+   ++  L W++L+
Sbjct:  171 PVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLMCY-DEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLE 339          
BLAST of EY708647 vs. ExPASy Swiss-Prot
Match: FBK67_ARATH (F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 3
Query:   12 LEVIIYSLKADTWRRTREFP--YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM-KGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCS 365
            +E  IYS +   WR    FP    + D   +G++I G L+W A   S       I+++D+  ++F E+  P    +G F   +G LRGCL +  Y       D+WVMKE+G   SWSKL S
Sbjct:  184 IETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSS---SSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGA-NADVWVMKEFGEVYSWSKLLS 300          
The following BLAST results are available for this feature:
BLAST of EY708647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FB233_ARATH9.610e-1930.85F-box protein At4g12560 OS=Arabidopsis thaliana GN... [more]
FBK50_ARATH1.344e-1239.68F-box/kelch-repeat protein At3g06240 OS=Arabidopsi... [more]
FB244_ARATH5.107e-1228.82F-box protein At4g22390 OS=Arabidopsis thaliana GN... [more]
FBK67_ARATH1.486e-1135.54F-box/kelch-repeat protein At3g23880 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-085-E06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY708647 ID=EY708647; Name=EY708647; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCTTGAAGTTATTATTTATAGTTTGAAAGCTGACACTTGG
AGACGGACTCGAGAATTCCCATATTATATTCTTGATGATCGATGTAATGG
TGTTTTCATTGCCGGTGCTCTGCATTGGTTGGCAGCACGAGGCTCTGTAA
GAACTGGTCAAAATATGATTCTTGCATTTGATCTGAAGAGTGAGAAATTT
TACGAAGTGCAACAGCCGCATGGAATGAAGGGAGGCTTTTGTAGCCAGGT
GGGGGTTTTGCGAGGATGCCTATGGATAAACAGTTATTATCATGATGAGC
CTCGCTGCGATATATGGGTGATGAAAGAGTATGGATCGCAACAGTCCTGG
TCTAAACTGTGTTCTTTTTCAAAAATGCTTCATGAAACTTGTTATTATAC
AGAAGCTTTTGCCTTTTCAAAAGATGGGGATAAAGCTTTAATTTATCAGC
ACAGCAGATGTCTGCATTGGTACAATCTAAAAGATCATAAGCAGGATGTC
ATTGAGATTCGTAATGGGAATCAAAGCTTTTGGGATGCATTTATCTGCAT
GGGAAGTCTTGCTTCAATTGATGCTTATACAACTGTANGTGTGGACACAG
AGTAGGGGAAAGATCCAACTACTGGGTTAAGGAGCTCTTACTTGTACGAG
AGGAGCTATGAAAGTTTTTGCTGCTTTGCTTCTGAAGGATGCTGCTTTCT
CTTATAGTTAGCTGAAATGAAGACTTGGTCTTACTCTTCCTGTCTCTTTG
ATTGGCCAAATTTTTCTATATACCTATTAGTGTGACTTTACAGATTTATT
TACTCACTCTACCCGTGCTCTCGGGATCAGAATGAGTATGTAATTCGATT
GAGACTGGAAATTTCAATGCTGGGGAATTCATCCACCTAATTAAA
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