EY708634

Overview
NameEY708634
Unique NameEY708634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY708634 vs. ExPASy Swiss-Prot
Match: CDS1_ARATH (Phosphatidate cytidylyltransferase OS=Arabidopsis thaliana GN=CDS1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.393e-52
Identity = 96/146 (65.75%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  212 MQSENNTSAPTTP--RLRHRRRSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLKKAHEERDLPGFRMLNWHFFFAARLFGYGRILQLTALHYRNFRQFFFQFVTPL 643
            M+ EN TS+P+TP  RLRHRRRSNE + D  K N S LLV+DRNKYKSF+VR YST+WMI GFVL+VYMGHLYITAMVVVIQIFMA+ELFNLL+KA E++ LP  + LNWHFFF A LF YGRIL     +     QFF++ V+ L
Sbjct:    1 MEEENVTSSPSTPVHRLRHRRRSNEVVTDGDKVNASPLLVNDRNKYKSFMVRTYSTLWMIGGFVLVVYMGHLYITAMVVVIQIFMAKELFNLLRKAPEDKCLPYIKQLNWHFFFTAMLFVYGRILSQRLANTMTADQFFYRLVSGL 146          

HSP 2 Score: 35.039 bits (79), Expect = 3.393e-52
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 1
Query:  619 FFSVCDPPIKYHVGIW*FLYISGFVWVPFTLKKE 720
            F+ +    IKYH+ I   LYI GF+W   TLKK+
Sbjct:  139 FYRLVSGLIKYHMAICYLLYIIGFMWFILTLKKK 172          
BLAST of EY708634 vs. ExPASy Swiss-Prot
Match: CDS1_SOLTU (Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.231e-47
Identity = 95/173 (54.91%), Postives = 121/173 (69.94%), Query Frame = 2
Query:  212 MQSENNTSAPTTP--RLRHRRRSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLKKAHEERDLPGFRMLNWHFFFAARLFGYGRILQLTALHYRNFRQFFFQFVTPLSSIMWVFGNFYIFPGSFGCLSP*RKKM 724
            M +++N+ AP TP  R+R RR SNE  P+  KANG+HLLV+DR+KYKS L+RAYS+VWMI GF  I+YMGHLYI AMVVVIQIFMA+ELFNLL++AHE+R LPGFR+LNWHFFF A LF YGR+L    ++     +F ++ V        V   F+   G    +   +KKM
Sbjct:    1 MHNDSNSGAPGTPSGRIRRRRGSNEVPPEVVKANGNHLLVNDRSKYKSMLIRAYSSVWMIGGFAFIIYMGHLYIWAMVVVIQIFMAKELFNLLRRAHEDRHLPGFRLLNWHFFFTAMLFVYGRMLSQRLVNTVTLDKFLYKLVGRFVKYHMVTCYFFYIAGFMWFILTLKKKM 173          
The following BLAST results are available for this feature:
BLAST of EY708634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CDS1_ARATH3.393e-5265.75Phosphatidate cytidylyltransferase OS=Arabidopsis ... [more]
CDS1_SOLTU2.231e-4754.91Phosphatidate cytidylyltransferase OS=Solanum tube... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-085-D02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY708634 ID=EY708634; Name=EY708634; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGCCCACGCGTTCTATCATCCTCTCTTTATTATTATTGTTA
TTATTCCCTCTCGACTCTCAACTATCGGCGCCTGCTTTATTTATTCGGGC
CTTGGGTTTCTCTCCACTACCACCGAAACTAAAAGCACACAGGTACTGAT
TTTTCTGCTCCACCTATATGTGTTCTCTTTTACCAATTAAGTAAAAGTTA
ATTGAAGAGACATGCAAAGTGAGAATAATACTAGTGCCCCAACAACACCT
CGACTTCGGCATCGAAGGCGTTCAAATGAGGCTATTCCAGATGCTACCAA
AGCAAATGGAAGCCATTTGCTTGTTCACGACCGGAACAAGTATAAGTCCT
TTCTGGTACGTGCTTACTCAACTGTTTGGATGATTGCGGGTTTCGTATTA
ATTGTCTACATGGGTCATCTCTATATTACTGCAATGGTGGTTGTAATCCA
AATCTTTATGGCAAGAGAGTTGTTCAACCTATTGAAGAAAGCGCATGAAG
AAAGGGATCTCCCTGGATTCAGGATGTTAAATTGGCATTTCTTCTTCGCT
GCGAGGCTATTTGGATATGGCCGCATTCTTCAGTTAACGGCTTTGCATTA
CCGAAACTTCAGACAATTTTTTTTTCAGTTTGTGACCCCCCTATCAAGTA
TCATGTGGGTATTTGGTAATTTCTATATATTTCCGGGTTCGTTTGGGTGC
CTTTCACCTTAAAGAAAGAAAATGTGAATGGGCGCCGGTTGTCCAGTTGC
TGGGGCCCGCAATGATAGCTAATGTGGCGGTGTGCGAAGTTTCCCGTCCT
GGGTGGCGGTGTTGTGGGCGGGAGGTCTTGTGATACTTCTTGTCATCGTT
CCCGCTTGTGTTTCCTCGCCGCGTCGGGGTTCATTCTAGGTATAACTCCG
G
back to top