EY708578

Overview
NameEY708578
Unique NameEY708578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY708578 vs. ExPASy Swiss-Prot
Match: VPS41_ARATH (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 4.351e-42
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 1
Query:  253 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVHGEYVGRCSDDGSVVINSLFTDE 522
            PRLKYQRMGG++P+LL+NDAASC+AVA RMIALGTH GTV ILD LGNQVKEF AHTA VND++FD  GEY+G CSDDGSVVINSLFTD+
Sbjct:   42 PRLKYQRMGGNVPALLSNDAASCIAVAARMIALGTHDGTVRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDD 131          

HSP 2 Score: 40.4318 bits (93), Expect = 4.351e-42
Identity = 18/41 (43.90%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  521 KQMTVDYHRPMNGVSLDPDYPVNCLQYLVLGGYPSHFTSTS 643
            ++M  DYHRPM  +SLDPDY     +  V GG   H    S
Sbjct:  132 EKMKFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNS 172          
BLAST of EY708578 vs. ExPASy Swiss-Prot
Match: VPS41_SOLLC (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.730e-39
Identity = 92/170 (54.12%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  145 MAPFPAENGVXXXXXXXXXXXXXXXXXXXXXXXXXXPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVHGEYVGRCSDDGSVVINSLFTDETNDSRLSSPDERRFSGPRLSS*LSTILGAGRLPKSFYLNFTNML 654
            M+P P+ENG+                          PRLKYQRMG S+PSLL+ DAA+C+AVAERMIALGTH G VHILDFLGNQVKEF AHTAAVNDL FD  GEYVG CSDDGSVVINSLFTDE        P +     P  +   S     G L    YLN    L
Sbjct:    1 MSPKPSENGIDGDDERDEEEEDSEEEEAEEEEEDE-PRLKYQRMGASVPSLLSADAATCIAVAERMIALGTHGGAVHILDFLGNQVKEFAAHTAAVNDLCFDTDGEYVGSCSDDGSVVINSLFTDERMKFEYHRPMKAIALDPDYARTSSRRFVTGGLAGQLYLNVKKWL 169          
BLAST of EY708578 vs. ExPASy Swiss-Prot
Match: VPS41_HUMAN (Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens GN=VPS41 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 6.088e-16
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  253 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVHGEYVGRCSDDGSVVINSLFTDE 522
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG V +  L++ E
Sbjct:   28 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGE 117          
BLAST of EY708578 vs. ExPASy Swiss-Prot
Match: VPS41_MOUSE (Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus GN=Vps41 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  253 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVHGEYVGRCSDDGSVVINSLFTDE 522
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG + +  L++ E
Sbjct:   27 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGE 116          
The following BLAST results are available for this feature:
BLAST of EY708578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS41_ARATH4.351e-4280.00Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_SOLLC8.730e-3954.12Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_HUMAN6.088e-1641.11Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_MOUSE1.771e-1540.00Vacuolar protein sorting-associated protein 41 hom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-084-E12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY708578 ID=EY708578; Name=EY708578; organism=Citrus sinensis; type=EST; length=917bp
GCCAAAGACACATCCCCCCCCCCCCNGGGNGAGAANNAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGCGTCCGTTATATTTCAT
TTTTCGCTCCGAACCGCACCAACCTGACGAAAGTCACCGTACAAATGGCT
CCGTTTCCGGCGGAAAACGGCGTCGAAGGCGACGACGAGAGAGAAGAAGA
AGAAGAAGAAGACGAAGACGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAG
AGCCAAGGCTCAAGTATCAAAGAATGGGAGGCAGCTTACCTTCTCTTTTG
GCAAACGACGCCGCTTCGTGCGTTGCTGTAGCTGAACGGATGATCGCTCT
CGGTACTCACGCCGGCACAGTTCATATTCTTGATTTTTTGGGGAATCAGG
TTAAGGAGTTTCCTGCTCATACTGCTGCTGTCAACGACCTTAGCTTTGAT
GTACATGGCGAATATGTAGGAAGATGTTCGGATGATGGTTCTGTTGTGAT
AAATAGCCTTTTCACTGATGAAACAAATGACAGTCGATTATCATCGCCCG
ATGAACGGCGTTTCTCTGGACCCCGATTATCCAGTTAACTGTCTACAATA
CTTGGTGCTGGGAGGCTACCCAAGTCATTTTACCTCAACTTCACTAATAT
GCTTATGGTACCGAGAACCAGGTGTAGAGATTCGAATAAAAGGACCACTC
AACGAAAGAAGACTGATGAAATAATACAGACAAAACCACCCCCGCTCCCC
GGCGCTCTATCGCCCTGTACCCCCCCGAGGCACACACGACGCACAGCGGA
AAAGCAGAGGCACCATCCAGAACACACACCCCCGACAGCAGTCGCCACGC
AACCGTATGTTGATGAAAGGTACATACCCTGCGCTATTGACCGTGTTCCC
TCTCTCCTCTACATTCC
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