EY744931

Overview
NameEY744931
Unique NameEY744931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 4.550e-20
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  110 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ +  A P  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVA-PLIGEL 124          
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 7.762e-20
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  110 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ +    P  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRW-VPPLIGEL 124          
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 7.762e-20
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  110 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ +    P  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRW-VPPLIGEL 124          
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 7.762e-20
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  110 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ +    P  GEL
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRW-VPPLIGEL 124          
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 7.762e-20
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  110 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            V QD PP GG+ P+ Y R +P +G S             +G + + K N+ RR L+ E + AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ +    P  GEL
Sbjct:    6 VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRW-VTPMMGEL 124          
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.324e-19
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 2
Query:   89 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            AS++   V QD PPPGG+ P+ Y R +P +G S             YG + + K N+ RR L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ +    P  GEL
Sbjct:   18 ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERRRLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRW-VPPLIGEL 143          
BLAST of EY744931 vs. ExPASy Swiss-Prot
Match: NDUAD_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 2.114e-17
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  110 VLQDGPPPGGFAPVRYARRIPTKGPSXXXXXXXXXXXXSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSRKMDALPASGEL 469
            V QD PPPGG+ P+ Y R +P +G S             +G +++ + N+ RR L  E   AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ +    P  GE+
Sbjct:    6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRW-VPPLIGEM 124          
The following BLAST results are available for this feature:
BLAST of EY744931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUAD_PONPY4.550e-2044.17NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PANTR7.762e-2043.33NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_HUMAN7.762e-2043.33NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_GORGO7.762e-2043.33NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_BOVIN7.762e-2042.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MACFA1.324e-1940.94NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MOUSE2.114e-1739.17NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-006-B02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744931 ID=EY744931; Name=EY744931; organism=Citrus sinensis; type=EST; length=988bp
CCACGCGTCCGGAAGAAGAATAGGAATCGCAAGCATCTGAAAATCAGTGA
AGATGACGGAGGCAATGATTAGAAAGAAGCCAGGAATGGCCAGCGTGAAG
GACATGCCCGTCCTACAAGACGGGCCCCCGCCGGGCGGGTTCGCCCCGGT
CCGATATGCCCGTCGGATCCCCACCAAGGGCCCCAGCGCCATGGCCCTCT
TTCTTGCAGCCTTTGGTGCTTTCTCTTATGGCATGTATCAGGTTGGCAAA
GGCAACAAGATCCGCAGGGCTCTTAAAGAAGAAAAGTATGCCGCACGCAG
GGCAATATTGCCTATGCTCCAAGCTGAAGAAGATGAAAGATTTGTCAAAG
AGTGGAAGAAGTATCTCGAGTATGAAGCTGAAGTAATGAAGGATGTGCCT
GGCTGGAAAGTCGGTGAAAATGTCTACAACTCCCGGAAAATGGATGCCCT
CCCAGCATCTGGGGAACTTCGTCCTGAAAACTGGTGATGGCATGTGGTTT
CCCCTGTTTGGCCCGGATAAACGATGTAAAAGAAAATTCGCGGGTCTTCC
GGGTGAAATTTTAACCTTTATCCCACTCAATGGCCCCCGGCACACAACAC
CTCCACTGAAATCCGAACGCGCGGAGATATCTGAATTGGCAACCCTGGAC
ACGATCGGTCCTAAAAAACTATCACAACGCCAGTAAACAAAAAGGGCACT
GAACCCACCAAAAAGCCTAGCTGCGGGCCACCACCAAGCGCTTGCCCCAC
CCCCCCCTGTCAGAAGAAGTGAACGAATGACGGAAACCAAAACACAGAAA
CCCAACCCTGCATCCAACGAAGCCGCCAACGAGCAGAGCCGACTCGCCCC
AAGGGACCCCCAACAGCCCACACGAAAACCCCAGCGCCCCATGACGCGCC
GCACGACCGTGACCCCAACCGCCCCCCCCATCGCTTCCATGTACCTGACA
CACACACGACACATTGCATCGCCCGACTGCGACACGCC
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