FC922536

Overview
NameFC922536
Unique NameFC922536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.588e-45
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = -1
Query:  422 LFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 751
            LFDMFD+T+PR++ ER+ FERE YGREAMNVIACE  +RVERPETY+QWQ R +RAGFKQ  +  EL+E   GKLK W YHKDFV+D+++ W+LQGWKGR ++ASSCWVPA
Sbjct:  520 LFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCWVPA 630          

HSP 2 Score: 31.9574 bits (71), Expect = 1.588e-45
Identity = 10/17 (58.82%), Postives = 17/17 (100.00%), Query Frame = -3
Query:  753 APFFVTRFREAIFHFSS 803
            APFF++RF+EA++H+S+
Sbjct:  503 APFFISRFKEAVYHYSA 519          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.630e-42
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = -1
Query:  425 LFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH-KDFVIDQDNNWMLQGWKGRIVFASSCWVP 751
            LFDM DT + REDP R+MFE+E YGRE MNV+ACEG ERVERPE+YKQWQAR +RAGF+Q+PL +EL++KL   +++ Y  K+F +DQD +W+LQGWKGRIV+ SS WVP
Sbjct:  584 LFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVP 693          

HSP 2 Score: 35.4242 bits (80), Expect = 2.630e-42
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = -3
Query:  753 APFFVTRFREAIFHFSS 803
            APFFVTRFRE +FH+SS
Sbjct:  567 APFFVTRFREVLFHYSS 583          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.078e-42
Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = -1
Query:  422 FLSQDFVKQSFTSLPLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 796
            F +  F +  F    LFD+F  T+ +E+PER+ FE E YGRE MNVIACEG++RVERPETYKQWQ R IRAGFKQ P+  EL++    K+K W YHKDFV+D+D+NW LQGWKGRI+F+SSCWVP+
Sbjct:  537 FFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCWVPS 662          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.186e-39
Identity = 76/125 (60.80%), Postives = 95/125 (76.00%), Query Frame = -1
Query:  422 FLSQDFVKQSFTSLPLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 796
            F    F +  F    +FDM D+ + RED  RLM+E+E YGRE +NV+ACEG ERVERPETYKQWQAR IRAGF+QLPL +ELM+ L  K++  Y K+F +DQ+ NW+LQGWKGRIV+ASS WVP+
Sbjct:  643 FFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLWVPS 767          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = -1
Query:  425 FLSQDFVKQSFTSLPLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVP 796
            F    F +  F    +FDM +T +PRED ER+  E EV+GREA+NVIACEG ERVERPETYKQW  R +R+G  Q+P +  +M+  + K+  +YHKDFVIDQDN W+LQGWKGR V A S W P
Sbjct:  591 FFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.874e-34
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  422 FLSQDFVKQSFTSLPLFDMFDTTIPREDP--ERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 796
            F    F +  F    LFDMFDTTI  ED    R + ERE+  R+AM+VI+CEG ER  RPETYKQW+ R +RAGFK   +++++M++    ++  YH+DFVID DNNWMLQGWKGR+++A SCW PA
Sbjct:  474 FFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA 600          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.693e-32
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = -1
Query:  422 FLSQDFVKQSFTSLPLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 796
            F    F +  F    LFDM++TT+  +D  R + ERE+  R+AM+VIACEG ER  RPETYKQWQ R +RAGF+   L++++++     +K  YHKDFVID DN+WM QGWKGR+++A SCW PA
Sbjct:  457 FFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPA 581          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  431 LFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 751
            +F+  D  +PR++ ER+  E+    ++ +N+IACEG +RVER E   +W++R   AGF+  PL+   +  ++ KL A Y   + +D+ +  ML GW+ R + ++S W
Sbjct:  465 MFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLS-SYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  431 LFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 751
            +F+  D T+PR+D ER+  E+    RE +N+IACEG ER ER E + +W+AR   AGF+  PL+  L+   +  L   Y  ++ + + +  +  GWK R +  SS W
Sbjct:  438 IFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLS-SLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of FC922536 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 34/107 (31.78%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  431 LFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 751
            L +  ++T+P  + +R   E  + GR+ +N +ACEG++R+ER E + +W+ R   AGF+ +PL++++ E +  +     H  F + +DN  +  GW GR +  +S W
Sbjct:  535 LLESVESTVPSTNSDRAKVEEGI-GRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRGNR-VHPGFTVKEDNGGVCFGWMGRALTVASAW 639          
The following BLAST results are available for this feature:
BLAST of FC922536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SCL34_ARATH1.588e-4568.47Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH2.630e-4265.45Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL31_ARATH3.078e-4261.90Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL14_ARATH3.186e-3960.80Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH8.675e-3756.45Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL11_ARATH6.874e-3453.54Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH1.693e-3252.00Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ1.440e-1534.58Chitin-inducible gibberellin-responsive protein 1 ... [more]
CIGR2_ORYSJ1.219e-1437.38Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL8_ARATH1.348e-1331.78Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CF05RM1 SLH Citrus sinensis cDNA clone KN0AAM2CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922536 ID=FC922536; Name=FC922536; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTAATGAAATTTCAAATTTCACTTTCATTATTACTGAT
AGAACCAAAACACAACTAATGTAACTAAAGGAAATATTTACAGAAACAAA
AAGATGAGGTCTACACTGGAGTACCATCACAAACAGCCCCTGCAACAGAA
CTTAGGGGATTGGAGAATGTCCCCAAGCTTTTCTCTACCGCATGAAGTTT
CTAAACCTATAATTGTCTACCACCAACATCATCAAGATAACCATACTTTG
CACAGTGACCAACGAGCTATAACCATACTACAGTAATTGCAGGATCATCT
GCTGGTTTTTTTTTTTATTCACTGATGATAAACACCAGGTCAGGAATCTT
CATCCACTTCCCAGGTTATTCTTTCCTGACTGGTCCAGGAAAAATATCAT
ACCTCCCAATCACAACTCTGGCGCAGGTACCCAACAAGAGGAAGCAAAAA
CAATTCTCCCCTTCCATCCCTGCAGCATCCAGTTGTTGTCTTGATCAATT
ACAAAGTCCTTGTGGTACCAAGCCTTCAACTTACCCATAAGTTTCTCCAT
CAGCTCCTGGTTCAGTGGCAGCTGCTTAAACCCAGCCCTTATGGTCCGCG
CCTGCCATTGCTTGTATGTCTCAGGCCTCTCAACCCTCTCCAAGCCCTCA
CAGGCAATAACATTCATTGCCTCTCGCCCATAAACTTCTCTTTCAAACAT
CAACCTCTCTGGATCTTCACGGGGTATGGTAGTATCAAACATATCAAACA
GGGGAAGAGAAGTGAAAGATTGCTTCACGAAATCTTGTGACAAAAAAAGG
AGCAT
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