EY679957

Overview
NameEY679957
Unique NameEY679957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.139e-35
Identity = 106/282 (37.59%), Postives = 140/282 (49.65%), Query Frame = 3
Query:   12 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVXXXXXXXXXXXXXKQMEGAGHGNRMNSENVHNRE--------EENSGVHGPWGQNG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHEETRNSEAILLIS*IIH--*KDLELKLKQFLQN*KPC**KNVNK*KKAREKFATEANPHITNSVGDLVGIPSQ 824
            + W+DQET LLLE +E+YN+NW +IA+HV +KSKAQCILHF+RLP+EDG+L+NVEV                G  S  NGDLPG   Q +D E +LPF  S NPVMALVAFLASAVGPRV             + +      +RM SE +  +E        ++  G H    QNG                               DHEE    E   L + I++   K +ELKLKQF +  +    K   + +K R++F+ E    ++   G   GI  Q
Sbjct:  401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTDS--NGDLPGYSEQGSDTEIKLPFVKSPNPVMALVAFLASAVGPRV-------AASCAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEE---REIQRLSANIVNHQLKRMELKLKQFAEI-ETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGISPQ 669          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.052e-18
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371
            W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED  LEN +                        G L             +PFS SGNPVM+ VAFLAS V PRV
Sbjct:  622 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASL---------------------GPL---------AYQPVPFSQSGNPVMSTVAFLASVVDPRV 709          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.052e-18
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371
            W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED  LEN +                        G L             +PFS SGNPVM+ VAFLAS V PRV
Sbjct:  623 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASL---------------------GPL---------AYQPVPFSQSGNPVMSTVAFLASVVDPRV 710          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.374e-18
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371
            W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED  LE+ E                        G L             +PFS SGNPVM+ VAFLAS V PRV
Sbjct:  601 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASL---------------------GPL---------AYQPIPFSQSGNPVMSTVAFLASVVDPRV 688          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.374e-18
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371
            W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED  LE+ E                        G L             +PFS SGNPVM+ VAFLAS V PRV
Sbjct:  601 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASL---------------------GPL---------AYQPIPFSQSGNPVMSTVAFLASVVDPRV 688          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.425e-15
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVE 176
            W+DQET LLLE +E++ +NWNEIAEHV+TK+KAQC+LHF+++P+ED  L+ ++
Sbjct:  367 WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQID 419          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: MYBX_DICDI (Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.922e-12
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHV-STKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFS---NSGNPVMALVAFLASAVGP 365
            W+D ET LLLEGIE++ DNW EI++++  +K+  QC+ HF+RLP+ED  LE                              P   L + ++++  PFS      NP+M+LVAF +S   P
Sbjct:  930 WTDIETLLLLEGIEIFRDNWQEISDYIGGSKTPEQCLTHFIRLPIEDEFLER------------------------KISSFPVGSLSKKEIDSNNPFSITYGVNNPIMSLVAFFSSYSQP 1025          
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe GN=ssr2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.281e-12
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 3
Query:   18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAV 359
            WS+QET LLLE IE Y D+WN+IA HV +++K QC++HF+++P+ED   + ++                        GD           +  LPF  + NPV++ + +LAS V
Sbjct:  250 WSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIEDPYRQKLQ------------------------GDF------SPFKKGFLPFDENENPVLSTLTYLASIV 333          
The following BLAST results are available for this feature:
BLAST of EY679957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SWI3C_ARATH6.139e-3537.59SWI/SNF complex subunit SWI3C OS=Arabidopsis thali... [more]
SMRC1_MOUSE1.052e-1843.22SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN... [more]
SMRC1_HUMAN1.052e-1843.22SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN... [more]
SMRC2_MOUSE1.374e-1843.22SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN... [more]
SMRC2_HUMAN1.374e-1843.22SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN... [more]
SWI3D_ARATH2.425e-1560.38SWI/SNF complex subunit SWI3D OS=Arabidopsis thali... [more]
MYBX_DICDI1.922e-1235.00Myb-like protein X OS=Dictyostelium discoideum GN=... [more]
SSR2_SCHPO4.281e-1234.21SWI/SNF and RSC complexes subunit ssr2 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-H05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679957 ID=EY679957; Name=EY679957; organism=Citrus sinensis; type=EST; length=952bp
CCACGCGTCCGGAGACTTGGAGTGATCAAGAAACATTTTTGCTGCTTGAG
GGTATAGAAATGTATAATGATAATTGGAATGAAATTGCAGAGCATGTTAG
TACCAAGTCAAAAGCACAATGTATCCTCCATTTCGTTCGTCTACCCATGG
AGGATGGCATACTGGAAAATGTCGAAGTTCCCAACACTTCCAGGACATCT
AATTCATCAAGTAGAGATGATCGTGGAGGATTGCATTCAACTGTAAATGG
CGATCTGCCAGGAGCAGGCCTTCAAGAAGCTGATATGGAAAACCGCCTCC
CATTTTCAAATTCTGGGAATCCAGTTATGGCCTTGGTTGCCTTTTTAGCT
TCTGCTGTCGGACCAAGAGTCGCTGCAGCTTGTGCCCATGCATCCTTGGC
AGCATTGTCTAAACAAATGGAAGGTGCTGGACATGGTAATAGGATGAACT
CAGAGAATGTACATAATAGAGAAGAAGAGAACTCCGGAGTTCATGGTCCT
TGGGGTCAAAATGGAGCTGAGGCTGCTCTATTATCTGCCGAAAAAGTTAA
AGCTGCTGCTAAAGCTGGTCTTGCTGCTGCAGCAACAAAAGCAAAACTGT
TTGCTGATCATGAAGAAACGAGAAATTCAGAGGCTATCCTGCTAATATCA
TAAATCATTCATTGAAAAGATTTGGAGCTGAAACTGAAGCAATTTTTGCA
AAATTGAAAACCTTGCTAATGAAAAAATGTGAACAAATAAAAAAAGGCAA
GGGAAAAGTTTGCCACCGAAGCGAACCCCCATATTACAAACTCGGTTGGG
GACCTGGTGGGAATCCCTTCCCAAAATGAAATCTCCTTGTTGTTTCCCCC
TTTCCTGGGGTAAAAAAAAACAATTGGGCAAACAACCCGGCCCAAAAGTG
GAGTGGTCACCCCTTCCCCTTCTCCAACCCAGAAACTTTACCCGGGTTTT
AA
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