EY679957
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 6.139e-35 Identity = 106/282 (37.59%), Postives = 140/282 (49.65%), Query Frame = 3 Query: 12 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVXXXXXXXXXXXXXKQMEGAGHGNRMNSENVHNRE--------EENSGVHGPWGQNG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHEETRNSEAILLIS*IIH--*KDLELKLKQFLQN*KPC**KNVNK*KKAREKFATEANPHITNSVGDLVGIPSQ 824 + W+DQET LLLE +E+YN+NW +IA+HV +KSKAQCILHF+RLP+EDG+L+NVEV G S NGDLPG Q +D E +LPF S NPVMALVAFLASAVGPRV + + +RM SE + +E ++ G H QNG DHEE E L + I++ K +ELKLKQF + + K + +K R++F+ E ++ G GI Q Sbjct: 401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTDS--NGDLPGYSEQGSDTEIKLPFVKSPNPVMALVAFLASAVGPRV-------AASCAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEE---REIQRLSANIVNHQLKRMELKLKQFAEI-ETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGISPQ 669
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.052e-18 Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371 W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED LEN + G L +PFS SGNPVM+ VAFLAS V PRV Sbjct: 622 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASL---------------------GPL---------AYQPVPFSQSGNPVMSTVAFLASVVDPRV 709
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 1.052e-18 Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371 W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED LEN + G L +PFS SGNPVM+ VAFLAS V PRV Sbjct: 623 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASL---------------------GPL---------AYQPVPFSQSGNPVMSTVAFLASVVDPRV 710
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.374e-18 Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371 W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED LE+ E G L +PFS SGNPVM+ VAFLAS V PRV Sbjct: 601 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASL---------------------GPL---------AYQPIPFSQSGNPVMSTVAFLASVVDPRV 688
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.374e-18 Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 371 W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED LE+ E G L +PFS SGNPVM+ VAFLAS V PRV Sbjct: 601 WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASL---------------------GPL---------AYQPIPFSQSGNPVMSTVAFLASVVDPRV 688
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 2.425e-15 Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVE 176 W+DQET LLLE +E++ +NWNEIAEHV+TK+KAQC+LHF+++P+ED L+ ++ Sbjct: 367 WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQID 419
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: MYBX_DICDI (Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.922e-12 Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHV-STKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFS---NSGNPVMALVAFLASAVGP 365 W+D ET LLLEGIE++ DNW EI++++ +K+ QC+ HF+RLP+ED LE P L + ++++ PFS NP+M+LVAF +S P Sbjct: 930 WTDIETLLLLEGIEIFRDNWQEISDYIGGSKTPEQCLTHFIRLPIEDEFLER------------------------KISSFPVGSLSKKEIDSNNPFSITYGVNNPIMSLVAFFSSYSQP 1025
BLAST of EY679957 vs. ExPASy Swiss-Prot
Match: SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe GN=ssr2 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 4.281e-12 Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 3 Query: 18 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPXXXXXXXXXXXXXXGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAV 359 WS+QET LLLE IE Y D+WN+IA HV +++K QC++HF+++P+ED + ++ GD + LPF + NPV++ + +LAS V Sbjct: 250 WSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIEDPYRQKLQ------------------------GDF------SPFKKGFLPFDENENPVLSTLTYLASIV 333 The following BLAST results are available for this feature:
BLAST of EY679957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY679957 ID=EY679957; Name=EY679957; organism=Citrus sinensis; type=EST; length=952bpback to top |