EY679940
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YCAN_ECOLI (Uncharacterized HTH-type transcriptional regulator ycaN OS=Escherichia coli (strain K12) GN=ycaN PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.069e-25 Identity = 59/126 (46.83%), Postives = 85/126 (67.46%), Query Frame = -1 Query: 50 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLT 427 R N++DF F A+AR++SF AG E+G+S+SA+SH+IK LE RL +RL NRTTRSV+LT AG L+ + DEI ++ +N FR PTG +++N AA + L +L F YP+I+++LT Sbjct: 2 RMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYPDIKVELT 127
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YCJZ_ECOLI (Uncharacterized HTH-type transcriptional regulator ycjZ OS=Escherichia coli (strain K12) GN=ycjZ PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22 Identity = 56/138 (40.58%), Postives = 87/138 (63.04%), Query Frame = -1 Query: 26 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTV----TNLISTR 427 R +AD + F+ +A +SF+RA + ++ SALS ++ +E RLG+RLL RTTRSV T AGE L SV+ + +I AM +L+ ++ P+G IR+ T+ AA +L P + F +PEI+I LT+ T+++S R Sbjct: 3 REEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSER 140
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: OPRR_PSEAE (Putative transcriptional regulator OS=Pseudomonas aeruginosa GN=PA2220 PE=4 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 4.465e-20 Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -1 Query: 47 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTV 427 + NL D + F+A+AR +F+RA ++G++ SALS +I GLE RL +RLL RTTRSV+ TAAGE L + I DEI ++ L+ RD+P+G +R+ LL P L YP+I+++ + Sbjct: 3 KRNLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDI 129
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YFER_SHIFL (Uncharacterized HTH-type transcriptional regulator yfeR OS=Shigella flexneri GN=yfeR PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.029e-16 Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = -1 Query: 53 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 421 +L +F+ +A+ KSFSRAG+ +G+S SA+SH++K LE GVRLL+RTTR V LT AG++L + +DE+ + R + +G++R+ + L+ + + RYP+I+ L Sbjct: 4 SLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVL 126
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YFER_ECOLI (Uncharacterized HTH-type transcriptional regulator yfeR OS=Escherichia coli (strain K12) GN=yfeR PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.029e-16 Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = -1 Query: 53 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 421 +L +F+ +A+ KSFSRAG+ +G+S SA+SH++K LE GVRLL+RTTR V LT AG++L + +DE+ + R + +G++R+ + L+ + + RYP+I+ L Sbjct: 4 SLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVL 126
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YAFC_ECOLI (Uncharacterized HTH-type transcriptional regulator yafC OS=Escherichia coli (strain K12) GN=yafC PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.344e-16 Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = -1 Query: 26 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL----TVTNLISTR 427 +A + +F+++ SFSRA +++G + SA+S A+K LE +LGV LLNRTTR ++LT GE + + E+ A + R+ P G +R++ + L P++ F +RYPE+ + L T+ NLI + Sbjct: 2 KATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERK 139
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: PTXR_PSEAE (HTH-type transcriptional regulator ptxR OS=Pseudomonas aeruginosa GN=ptxR PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.941e-15 Identity = 43/135 (31.85%), Postives = 75/135 (55.56%), Query Frame = -1 Query: 32 QVDRANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTVTNLIS 436 +++ NL F+A+A H SF+ A + +G+S S LS ++ LE LG++LL RTTR +TLT GE L V + E+ A+ + + EP+GR+R+ D + V F ++P++++++ + S Sbjct: 7 RLNHLNLNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVEMLADDQFS 141
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: OXYR_STRVD (Probable hydrogen peroxide-inducible genes activator OS=Streptomyces viridosporus GN=oxyR PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.643e-14 Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = -1 Query: 53 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 421 +LA F A+A H F A +G+S ALS A+ LE LGV LL RTTR V L+ AGE L + + E+G +E + + TG +RL + A +L VL + +DRYP +++ + Sbjct: 9 SLAQLRAFAAVAEHLHFRDAAAAIGMSQPALSGAVSALEESLGVTLLERTTRKVLLSPAGERLAARAKSVLAEVGALVEEADALQAPFTGVLRLGVIPTVAPYVLPTVLRLVHDRYPRLDLQV 131
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: CYNR_ECOLI (HTH-type transcriptional regulator cynR OS=Escherichia coli (strain K12) GN=cynR PE=1 SV=5) HSP 1 Score: 75.485 bits (184), Expect = 5.286e-13 Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = -1 Query: 53 FLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 400 FLA+A H SF+RA + +S ALS I+ LE LGV L +R+ R++ LT AGE S + E+G A++ D G +R+ +GP++ F RYP I + L Sbjct: 9 FLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQL 124
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: CYNR_ECO57 (HTH-type transcriptional regulator cynR OS=Escherichia coli O157:H7 GN=cynR PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.178e-12 Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = -1 Query: 53 FLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 400 FLA+A H SF+RA + +S ALS I+ LE LGV L +R+ R++ LT AGE S + E+G A++ D G +R+ +GP++ F RYP I + L Sbjct: 9 FLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIHLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPGITLQL 124 The following BLAST results are available for this feature:
BLAST of EY679940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >EY679940 ID=EY679940; Name=EY679940; organism=Citrus sinensis; type=EST; length=976bpback to top |