EY679940

Overview
NameEY679940
Unique NameEY679940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length976
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YCAN_ECOLI (Uncharacterized HTH-type transcriptional regulator ycaN OS=Escherichia coli (strain K12) GN=ycaN PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.069e-25
Identity = 59/126 (46.83%), Postives = 85/126 (67.46%), Query Frame = -1
Query:   50 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLT 427
            R N++DF  F A+AR++SF  AG E+G+S+SA+SH+IK LE RL +RL NRTTRSV+LT AG  L+  +    DEI   ++ +N FR  PTG +++N    AA + L  +L  F   YP+I+++LT
Sbjct:    2 RMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYPDIKVELT 127          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YCJZ_ECOLI (Uncharacterized HTH-type transcriptional regulator ycjZ OS=Escherichia coli (strain K12) GN=ycjZ PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22
Identity = 56/138 (40.58%), Postives = 87/138 (63.04%), Query Frame = -1
Query:   26 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTV----TNLISTR 427
            R  +AD + F+ +A  +SF+RA   + ++ SALS  ++ +E RLG+RLL RTTRSV  T AGE L SV+   + +I  AM +L+  ++ P+G IR+ T+  AA  +L P +  F   +PEI+I LT+    T+++S R
Sbjct:    3 REEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSER 140          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: OPRR_PSEAE (Putative transcriptional regulator OS=Pseudomonas aeruginosa GN=PA2220 PE=4 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.465e-20
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -1
Query:   47 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTV 427
            + NL D + F+A+AR  +F+RA  ++G++ SALS +I GLE RL +RLL RTTRSV+ TAAGE L + I    DEI   ++ L+  RD+P+G +R+         LL P L      YP+I+++  +
Sbjct:    3 KRNLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDI 129          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YFER_SHIFL (Uncharacterized HTH-type transcriptional regulator yfeR OS=Shigella flexneri GN=yfeR PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.029e-16
Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = -1
Query:   53 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 421
            +L    +F+ +A+ KSFSRAG+ +G+S SA+SH++K LE   GVRLL+RTTR V LT AG++L   +   +DE+   +    R   + +G++R+      +  L+   +   + RYP+I+  L
Sbjct:    4 SLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVL 126          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YFER_ECOLI (Uncharacterized HTH-type transcriptional regulator yfeR OS=Escherichia coli (strain K12) GN=yfeR PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.029e-16
Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = -1
Query:   53 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 421
            +L    +F+ +A+ KSFSRAG+ +G+S SA+SH++K LE   GVRLL+RTTR V LT AG++L   +   +DE+   +    R   + +G++R+      +  L+   +   + RYP+I+  L
Sbjct:    4 SLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVL 126          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YAFC_ECOLI (Uncharacterized HTH-type transcriptional regulator yafC OS=Escherichia coli (strain K12) GN=yafC PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.344e-16
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = -1
Query:   26 RANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL----TVTNLISTR 427
            +A   +  +F+++    SFSRA +++G + SA+S A+K LE +LGV LLNRTTR ++LT  GE     +   + E+  A   +   R+ P G +R++  +      L P++  F +RYPE+ + L    T+ NLI  +
Sbjct:    2 KATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERK 139          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: PTXR_PSEAE (HTH-type transcriptional regulator ptxR OS=Pseudomonas aeruginosa GN=ptxR PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.941e-15
Identity = 43/135 (31.85%), Postives = 75/135 (55.56%), Query Frame = -1
Query:   32 QVDRANLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTVTNLIS 436
            +++  NL     F+A+A H SF+ A + +G+S S LS  ++ LE  LG++LL RTTR +TLT  GE L  V    + E+  A+  +   + EP+GR+R+    D     +  V   F  ++P++++++   +  S
Sbjct:    7 RLNHLNLNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVEMLADDQFS 141          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: OXYR_STRVD (Probable hydrogen peroxide-inducible genes activator OS=Streptomyces viridosporus GN=oxyR PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.643e-14
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = -1
Query:   53 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 421
            +LA    F A+A H  F  A   +G+S  ALS A+  LE  LGV LL RTTR V L+ AGE L +     + E+G  +E  +  +   TG +RL  +   A  +L  VL + +DRYP +++ +
Sbjct:    9 SLAQLRAFAAVAEHLHFRDAAAAIGMSQPALSGAVSALEESLGVTLLERTTRKVLLSPAGERLAARAKSVLAEVGALVEEADALQAPFTGVLRLGVIPTVAPYVLPTVLRLVHDRYPRLDLQV 131          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: CYNR_ECOLI (HTH-type transcriptional regulator cynR OS=Escherichia coli (strain K12) GN=cynR PE=1 SV=5)

HSP 1 Score: 75.485 bits (184), Expect = 5.286e-13
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = -1
Query:   53 FLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 400
            FLA+A H SF+RA   + +S  ALS  I+ LE  LGV L +R+ R++ LT AGE      S  + E+G    A++   D   G +R+          +GP++  F  RYP I + L
Sbjct:    9 FLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQL 124          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: CYNR_ECO57 (HTH-type transcriptional regulator cynR OS=Escherichia coli O157:H7 GN=cynR PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.178e-12
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = -1
Query:   53 FLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 400
            FLA+A H SF+RA   + +S  ALS  I+ LE  LGV L +R+ R++ LT AGE      S  + E+G    A++   D   G +R+          +GP++  F  RYP I + L
Sbjct:    9 FLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIHLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPGITLQL 124          
The following BLAST results are available for this feature:
BLAST of EY679940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YCAN_ECOLI2.069e-2546.83Uncharacterized HTH-type transcriptional regulator... [more]
YCJZ_ECOLI6.230e-2240.58Uncharacterized HTH-type transcriptional regulator... [more]
OPRR_PSEAE4.465e-2041.73Putative transcriptional regulator OS=Pseudomonas ... [more]
YFER_SHIFL1.029e-1636.59Uncharacterized HTH-type transcriptional regulator... [more]
YFER_ECOLI1.029e-1636.59Uncharacterized HTH-type transcriptional regulator... [more]
YAFC_ECOLI1.344e-1634.06Uncharacterized HTH-type transcriptional regulator... [more]
PTXR_PSEAE1.941e-1531.85HTH-type transcriptional regulator ptxR OS=Pseudom... [more]
OXYR_STRVD1.643e-1437.40Probable hydrogen peroxide-inducible genes activat... [more]
CYNR_ECOLI5.286e-1336.21HTH-type transcriptional regulator cynR OS=Escheri... [more]
CYNR_ECO571.178e-1236.21HTH-type transcriptional regulator cynR OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679940 ID=EY679940; Name=EY679940; organism=Citrus sinensis; type=EST; length=976bp
CGGGCCGGCGGTACGGTCCGGAATTCCGGGTCGAAATCAAATTGGTCACC
GTCAAGTCGATCTCGATTTCAGGATAGCGGTCATTGAATACTGGCAAAAC
AGGGCCGAGGAGAAGATCGGCGGCATCGCTCAGGGTGTTCAGTCGAATGC
GGCCGGTTGGCTCGTCGCGGAAGCGATTGAGGGCTTCCATGGCTTGACCG
ATCTCGTCCATTGGTACGCTGATCACGCTGTGAAGTTCTTCACCAGCGGC
TGTTAGCGTGACGCTGCGGGTAGTGCGGTTCAGAAGGCGAACACCGAGAC
GTGTCTCCAGACCTTTGATTGCATGGCTCAATGCTGAAGCGCTAATACCA
ACCTCTTGTCCGGCCCGGCTGAAGCTTTTGTGCCTGGCAATGGCCAAAAA
TAATACAAAATCGGCAAGGTTGGCTCGATCGACCTGCATGCTGTTACCCC
GTCCGGTTGTTCGAATGGCAGCGAGCTTTATTTGGCTGCCACATCCAGGG
ATTCTACCAATCGATGCGCAACTCATTGCTGAGTATGCCTCAACCAACTA
TTAACAATGACTCAGTAATTTTCAACAGCTCCGCGAAGTGGCCCTAGCGT
TGACAATCCAGTGATAAATTCTTCCTCCTTTTTCAAGGGGGCTCGTTTAA
ACGTCTACTTGGCTTGCCACGTCGCCAGGACCTTGGACAACGGGGCCTAC
CTTTGCCAAAACACGAAAATCCGGTTCCCTTGCACACCCCCTGCAATTAA
GCCTTCGGTCCTGTTCAGGGGGCTTTAAGCCCATTTCATTAAGTTAAAGG
GGGATACCTAATCAAAAATTTATCAATTATAGTGGATAGGGGGGGACTTA
CTCCACTGGGTACTAATAACCCGCCACCAAAAAACTAAGACACCCCACAC
CCGCGTTACAAACCATCACGAGGGCAGATAACTTGCGTCCAACTTGAAAA
CAGGTCGTTTGCGTAACCGATTTATT
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