EY679891
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 3.249e-60 Identity = 112/158 (70.89%), Postives = 124/158 (78.48%), Query Frame = 2 Query: 125 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF 598 MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIH YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREF Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREF 158
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20 Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++REF V GPI ++ + R G R + Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGY 146
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20 Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++REF V GPI ++ + R G R + Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGY 146
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.130e-20 Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++REF V GPI ++ + R G R + Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGY 146
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.631e-19 Identity = 60/146 (41.10%), Postives = 76/146 (52.05%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPINGEGILNTPRWGLVRSW 670 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHND N GD +KTLFVAR++Y+TTESK++REF V GPI ++ R G R + Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYNKRSGKPRGY 146
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.634e-19 Identity = 57/129 (44.19%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPI 619 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHND N GD +KTLFVAR++Y+TTESK++REF V GPI Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPI 129
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.879e-16 Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPI 619 L A LL LF PR PL Y PP PEKR P ++G+A+++ +A+ D Y P E+ E+R R+ +DP +D +V GDPYKT+F++RLSY+T ES I+REF GPI Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREF-TRYGPI 126
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13 Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF 598 L NL +F PR P + PPP PP TG+ ++S F +P +P +E E E+R + +DP+++ +GDPYKT+FV+R+SY+TT+ K++ EF Sbjct: 4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEF 119
BLAST of EY679891 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 8.670e-13 Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 248 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREF*VLMGPI 619 L NLL LF R P+ + PP P ++K G+A+F++ F +P D VE + +ERR R +DP N + DP++TLF+AR++Y+T+ESK++REF GPI Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREF-EFYGPI 128 The following BLAST results are available for this feature:
BLAST of EY679891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY679891 ID=EY679891; Name=EY679891; organism=Citrus sinensis; type=EST; length=952bpback to top |