EY679813

Overview
NameEY679813
Unique NameEY679813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length994
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 7.691e-84
Identity = 160/220 (72.73%), Postives = 181/220 (82.27%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV L+PS +E++  G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRVAGGPLG-EVVDPLYPGGSFDPLGL-AEDPEAFAE-LKVKEIKNGRLAMF 224          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 1.004e-83
Identity = 160/220 (72.73%), Postives = 181/220 (82.27%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV L+PS +E++  G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRVAGGPLG-EVVDPLYPGGSFDPLGL-AEDPEAFAE-LKVKEIKNGRLAMF 223          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 2.238e-83
Identity = 159/220 (72.27%), Postives = 180/220 (81.82%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV L+PS +E++  GR++MRKTA+K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRIAGGPLG-EVVDPLYPGGSFDPLGL-ADDPEAFAE-LKVKEIKNGRLAMF 224          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.817e-83
Identity = 157/218 (72.02%), Postives = 177/218 (81.19%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG-----YRVAGGPLG-EVVDPLYPGGSFDPLGL-AEDPEAFAE-LKVKEIKNGRLAMF 222          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 4.985e-83
Identity = 157/218 (72.02%), Postives = 176/218 (80.73%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRIAGGPLG-EVVDPLYPGGSFDPLGL-AEDPEAFAE-LKVKEIKNGRLAMF 222          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.894e-82
Identity = 157/220 (71.36%), Postives = 179/220 (81.36%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++   + GRLAMF
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRVAGGPLG-EVVDPLYPGGSFDPLGL-AEDPEAFAE-LKVKHIKNGRLAMF 224          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.894e-82
Identity = 158/220 (71.82%), Postives = 180/220 (81.82%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV L+PS +E++  G+++MRKTA+K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +   PLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRVAGEPLG-EVVDPLYPGGSFDPLGL-AEDPEAFAE-LKVKEIKNGRLAMF 223          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.894e-82
Identity = 156/216 (72.22%), Postives = 177/216 (81.94%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            G+AV L+P+  E+    + +MRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG + TDP+YPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRIAGGPLG-EVTDPIYPGGSFDPLGL-ADDPEAFAE-LKVKELKNGRLAMF 212          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 3.231e-82
Identity = 158/220 (71.82%), Postives = 178/220 (80.91%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG + TDPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG-----YRVAGGPLG-EVTDPLYPGGSFDPLGL-ADDPEAFAE-LKVKEIKNGRLAMF 224          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 5.512e-82
Identity = 159/216 (73.61%), Postives = 176/216 (81.48%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIW     L G ++G       +  GPLG + TDP+YPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG-----YRIAGGPLG-EVTDPIYPGGSFDPLGL-ADDPEAFAE-LKVKELKNGRLAMF 220          
The following BLAST results are available for this feature:
BLAST of EY679813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB24_TOBAC7.691e-8472.73Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.004e-8372.73Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC2.238e-8372.27Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC3.817e-8372.02Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC4.985e-8372.02Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC1.894e-8271.36Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL1.894e-8271.82Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_CUCSA1.894e-8272.22Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC3.231e-8271.82Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN5.512e-8273.61Chlorophyll a-b binding protein 3, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679813 ID=EY679813; Name=EY679813; organism=Citrus sinensis; type=EST; length=994bp
CTTCTCTTGCTTACCCGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAAT
TAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTC
GGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGG
CCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCC
CGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAG
CCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACAC
AGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCG
AAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTC
CCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTT
CAAGGCGGGAGCCCAGATCTTCAGCGAGGGCGGGCTAGACTACTTGGGAA
ACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGGCTTGCCA
GGTGGTCTTGATGGGGAGCCGTTGAAGGTTACAGAATTGCTGGAGGGGCC
CCTCGGGTGAAAGTGAACTGACCCATTGTACCCAGGTGGCAGCCTTTGAT
CCATTGGGTTTTGGCTGATGAACCCGAAGGCTTTTGCTGAACCCCAAAGG
TTAGGGAAATCAAGAATGGGAAGGTTGGCTATGTTTCTCCATGTTTGGTT
TCCTTGTTTCAGGCAATTGGCCACAGAAAAGGGAACAGATAAAAAAACTT
AGACCAAAACTTTTGCGCAAAACCCCTTTAAAAAGAAAATGCCGGGGGCC
TACACCCACCCAAATTTTTTATCCCCGAGAAAAAGAAACATCTCGGTTTG
AAAGACAAAAATAAAAAACCAGGGACAAAATAATGAAATATGTGAGACGT
GACAATGTAGTTTCATTGGCGGAAATTCAAAACAACAATATTAA
back to top