EY679800

Overview
NameEY679800
Unique NameEY679800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.235e-104
Identity = 193/219 (88.13%), Postives = 198/219 (90.41%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTPN 655
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPG SIDFFGALRARVY DE  ++   +GV   GK L     NSKE  P+
Sbjct:  168 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLV----NSKEGPPS 382          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 8.849e-103
Identity = 189/218 (86.70%), Postives = 196/218 (89.91%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPG SIDFFGALRARVYDDE  ++   +GV   GK L     NSKE  P
Sbjct:  168 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLV----NSKEGPP 381          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 4.392e-102
Identity = 186/218 (85.32%), Postives = 196/218 (89.91%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPG SIDFFGALRARVYDDE  ++    GV   GK L     NS+E  P
Sbjct:  159 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLV----NSREGPP 372          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 2.180e-101
Identity = 185/218 (84.86%), Postives = 195/218 (89.45%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEFGI-LGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPG SIDFFGALRARVYDDE  ++ + +GV   G+ L     NSKE  P
Sbjct:  165 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLV----NSKESPP 378          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 2.410e-100
Identity = 188/218 (86.24%), Postives = 195/218 (89.45%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEFGI-LGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPG SIDFFGALRARVYDDE  ++   +GV   GK L     NSKE  P
Sbjct:  168 GQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLV----NSKEGPP 381          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 364.77 bits (935), Expect = 4.111e-100
Identity = 185/218 (84.86%), Postives = 191/218 (87.61%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG SIDFFGALRARVYDDE  +F   LGV   GK L     NS+E  P
Sbjct:  168 GQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLV----NSREGPP 381          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 5.369e-100
Identity = 178/206 (86.41%), Postives = 190/206 (92.23%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKAL 616
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPG SIDFFGALRARVYDDE  ++ G  G+   GK L
Sbjct:  158 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRL 363          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.562e-99
Identity = 186/218 (85.32%), Postives = 193/218 (88.53%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPG SIDFFGALRARVYDDE  ++ G +GV    K L     NS+E  P
Sbjct:  156 GQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLV----NSREGPP 368          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 360.918 bits (925), Expect = 5.936e-99
Identity = 183/218 (83.94%), Postives = 192/218 (88.07%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPG SIDFFGALRARVYDDE  ++   +GV   GK L     NSKE  P
Sbjct:  170 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLV----NSKEGPP 383          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.727e-98
Identity = 180/218 (82.57%), Postives = 193/218 (88.53%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPG SIDFFGALRARVYDDE  ++    G+ L G+ L     NS++  P
Sbjct:  167 GQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLL----NSRDGPP 380          
The following BLAST results are available for this feature:
BLAST of EY679800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA1_LARTR1.235e-10488.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR8.849e-10386.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.392e-10285.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.180e-10184.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.410e-10086.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH4.111e-10084.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.369e-10086.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.562e-9985.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.936e-9983.94Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.727e-9882.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-B06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679800 ID=EY679800; Name=EY679800; organism=Citrus sinensis; type=EST; length=941bp
AGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCA
TCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGA
GAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTAT
CAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAG
CTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGGTT
AACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTCCAACTCCC
TGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATAGTCACCG
GTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATG
GAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAA
GGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTG
TTGACACCTTCCCCGGCCCATCCATTGATTTCTTTGGAGCCCTGAGGGCC
AGAGTCTATGATGATGAAGGTGAGGAATTTGGGATCCTTGGGGTATTGTT
GTTTGGGAAAGCATTGGCCACACCCTTGGGGAACTCAAAGGAACCCACCC
CCAACATTCCAGCAATCCAAGGATGAACATGGGAAAACCTTGCCCAAGTA
CCGGAAAAATTGAATTGTGGCAAAAGCCAAAAAAGGGGGAACAGGGGTTC
CTTTCGGTGAACAGTTATTTTTAATGGGGGCCCCTCTTTTGGGTGAGACC
CTAGGGAGAATTCCCTTCCCAAGAGGGGAATATTTCTCGGGCCAAAACCC
CACCCCACCAAAAATAATCAGTCTCCTTTCCCCGGAAGGGCGGGGACTCG
ACCCCCCGCCGCGCCAAACAAGTTTTTTTGCTACCACCGAG
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