EY679708

Overview
NameEY679708
Unique NameEY679708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: Y1770_SYNY3 (Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803) GN=sll1770 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.893e-40
Identity = 69/158 (43.67%), Postives = 109/158 (68.99%), Query Frame = 2
Query:   29 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQ--ELGFKKP 496
            T+ QILT+EY+PGIKI+   +L+  G++RK L +    +YL Q+L+HGFFHADPHPGN+AV     G LIFYDFGMMG I+P+ +  L++T +GV EK+A++++ ++V +G L  T D   +RR+ QF L++F ++   ++   +I+    E+ + +P
Sbjct:  265 TSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSP-EAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQP 421          

HSP 2 Score: 39.6614 bits (91), Expect = 5.893e-40
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 3
Query:  561 WPIAADQPFRFPPHSHLLVRTFSVLDGIGKG 653
            + IA DQPFRFP     ++R FS L+G+GKG
Sbjct:  414 YEIAYDQPFRFPATFTFVMRAFSTLEGVGKG 444          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: Y095_SYNY3 (Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803) GN=sll0095 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.425e-30
Identity = 55/136 (40.44%), Postives = 94/136 (69.12%), Query Frame = 2
Query:   29 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEER 436
            TT  +LT+EY+PGIK++  Q+L+  G++   + +  + +YL+Q+L  GFF +DPHPGN+AVD  + G LIFYDFG M  +    ++ +++TF+ V  KD ++VL+A++ MG++ P GD + ++R   F L++F ++
Sbjct:  242 TTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRDK 375          

HSP 2 Score: 31.187 bits (69), Expect = 7.425e-30
Identity = 13/36 (36.11%), Postives = 21/36 (58.33%), Query Frame = 3
Query:  543 Q*GKIYWPIAADQPFRFPPHSHLLVRTFSVLDGIGK 650
            Q G+  + +   QPFR PP    ++++ S LDGI +
Sbjct:  384 QVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIAR 419          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: Y005_SYNY3 (Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803) GN=sll0005 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19
Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   29 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGD 382
            T  ++LTME+V GIK+  I+++   G+D   L    V+  L Q+L HGFFHADPHPGN+    +  GRL + DFGMM +I P  R GL+E    +  +D D + +  V++  L P  D
Sbjct:  283 TGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTD 398          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: UBIB_CHRVO (Probable ubiquinone biosynthesis protein ubiB OS=Chromobacterium violaceum GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.696e-17
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   38 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSK 505
            ++LT+E++ GI + +I+ L E GVD ++L R+ VE +  Q+  HGFFHAD HPGNI V     GR I  DFG++GS++   +  L   F   + +D  +V  A ++ G  VP  DT A            EE  AA R     T  E  F+KPLS+
Sbjct:  237 EVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFV--AADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESG-WVPR-DTRA------------EELEAAVR-----TVCEPIFEKPLSE 371          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: Y1919_SYNY3 (Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803) GN=slr1919 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.084e-16
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   38 QILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAV 394
            ++LT+E++ G K+     +   G+D   + R  V S L Q+L HGFFHADPHPGN+       GR+ + DFGMM  + P  +E +  +   +  KD   + +  + +G L P  D T +
Sbjct:  253 KVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFA--TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPI 369          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: UBIB_BURXL (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia xenovorans (strain LB400) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.084e-16
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   32 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPT 376
            TP +L ME + G+ I+++++L   GVD  +L R  VE +  Q+   GFFHAD HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G + PT
Sbjct:  234 TPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPT 350          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: UBIB_BURPP (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.084e-16
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   32 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPT 376
            TP +L ME + G+ I+++++L   GVD  +L R  VE +  Q+   GFFHAD HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G + PT
Sbjct:  234 TPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPT 350          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: YHG1_CLOPA (Uncharacterized protein in hydrogenase 1 5'region (Fragment) OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.295e-15
Identity = 39/111 (35.14%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   32 TPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGV 364
            T +I+ ME + GIKI+ ++ L   G D + LG+    SY +Q+   GFFH DPHPGN+ + +     + + DFG+MG+IS +++  L +    V   D +K++  ++ +GV
Sbjct:  213 TEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLIRE---NHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGV 320          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: UBIB_BURPS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.295e-15
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   29 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVP 373
            +TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G + P
Sbjct:  233 STPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349          
BLAST of EY679708 vs. ExPASy Swiss-Prot
Match: UBIB_BURP6 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.295e-15
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   29 TTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVP 373
            +TP +L ME + G+ I+++ +L   GVD  +L R  VE +  Q+   GFFHAD HPGNI V  D  + GR I  DFG++G++S   +  L + F   +++D  +V    ++ G + P
Sbjct:  233 STPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPP 349          
The following BLAST results are available for this feature:
BLAST of EY679708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
Y1770_SYNY35.893e-4043.67Uncharacterized protein sll1770 OS=Synechocystis s... [more]
Y095_SYNY37.425e-3040.44Uncharacterized protein sll0095 OS=Synechocystis s... [more]
Y005_SYNY31.688e-1941.53Uncharacterized protein sll0005 OS=Synechocystis s... [more]
UBIB_CHRVO2.696e-1738.46Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
Y1919_SYNY35.084e-1634.45Uncharacterized protein slr1919 OS=Synechocystis s... [more]
UBIB_BURXL5.084e-1637.61Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURPP5.084e-1637.61Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
YHG1_CLOPA3.295e-1535.14Uncharacterized protein in hydrogenase 1 5'region ... [more]
UBIB_BURPS3.295e-1536.75Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP63.295e-1536.75Probable ubiquinone biosynthesis protein ubiB OS=B... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-B06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679708 ID=EY679708; Name=EY679708; organism=Citrus sinensis; type=EST; length=975bp
CCACGCGTCCGACGATATTTTGGGAAACACCACACCACAGATTTTGACCA
TGGAGTATGTGCCGGGGATCAAAATAAACAGGATACAATCTTTAGATGAA
TTGGGTGTTGATCGAAAAAGGTTGGGTCGATATGCGGTTGAATCTTACTT
GGAACAAATTCTTTCACATGGTTTTTTTCATGCTGACCCTCATCCTGGAA
ATATCGCTGTAGATGATGTAAATGGTGGAAGATTGATCTTCTATGATTTT
GGTATGATGGGAAGTATTAGTCCAAACATTAGAGAAGGTCTGCTTGAAAC
ATTTTACGGAGTTTACGAGAAGGATGCAGACAAGGTCCTTCAGGCAATGG
TTCAAATGGGTGTTCTTGTCCCTACTGGAGATACAACAGCTGTCAGGCGA
ACAGCACAGTTCTTCCTTAACAGTTTTGAAGAGCGTCTTGCTGCACAAAG
AAAAGAAAGAGAAATAACGACCCAAGAACTTGGCTTTAAAAAGCCATTGA
GCAAGGAGGAAAAGATTGAGAAAAAGAAGCAACGCCTTGCTGCAATAGGG
GAAGATTTATTGGCCCATTGCAGCTGATCAACCTTTCCGATTTCCACCAC
ATTCACATTTGTTGGTCAGAACATTTTCAGTTTTAGATGGCATTGGGAAA
GGGCCTTGGATCCTCGGTTTTGACTTCACTGAAATTGGCTAACCTTATGG
CAATGGAATTGCTCAAATTTTCGTGAGGTTGGAATTTAAATTTATCCTTG
AAGGAATTCAAAAACAGGGGGGAACCGGGCAAACCCCGTGCTTTCCAACA
CCTTATTTAAGGGCGGGCTAACAAAATTTAAAAAGCTTTGCAAAAAACTA
TCCAACCAATTTGGGAAAAAGGGGAAATCTAAAACCCCTCGGGGGTCCAA
AAATTATAAAATCTCGAAAAGGGACATTCCCCCCCGTGTTTTCCAACCCC
TTTTTAAAAAAAAAAAAAAGGGGGG
back to top