EY679696

Overview
NameEY679696
Unique NameEY679696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8622 contig Csv1_Contig8622:1..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_PHAVU (Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.928e-32
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 319
            +APYDLVMQTKQLGRLPVVHF            +MMQLGCD            DP KRA+AIV+AVTHYSDPE+LAEVSCGLGEAMVG+NLSD  VERFA+RSE
Sbjct:  209 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNVERFANRSE 312          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_HEVBR (Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.229e-30
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 319
            +APYDLVMQTKQLGRLPVV F            +MMQLGCD            DP +RA+AIV+AVTHYSDP++LAEVSCGLGEAMVG+NL+D KVERFA+RSE
Sbjct:  206 AAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDKKVERFANRSE 309          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX13_ARATH (Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 2.229e-30
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 319
            +APYDLVMQTKQLGRLPVV F            +MMQLGCD            DP +RA+AIV+AVTHYSDPE+L EVSCGLGEAMVG+NL+D KVERFA+RSE
Sbjct:  206 AAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDEKVERFANRSE 309          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX11_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.445e-29
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 319
            +APYDLVMQTKQLGRLPVV F            +MMQLGCD            DP +RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD KVERFA+RSE
Sbjct:  215 AAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKVERFAARSE 318          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_GINBI (Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.926e-28
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 319
            +APY+LV QTKQLGRLPVV+F            +MMQLGCD            DP +RA+AIV+AVTHY+DP +LAEVSC LGEAMVG+NL D KVER+A RSE
Sbjct:  206 AAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHILAEVSCSLGEAMVGINLKDEKVERYAERSE 309          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX12_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.012e-27
Identity = 66/106 (62.26%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK--VERFASRSE 319
            +APYDLVMQTKQLGRLPVV F            +MMQLGCD            DP  RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD K  VERFA+RS+
Sbjct:  208 AAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKIHVERFAARSD 313          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX11_ARATH (Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.012e-27
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 319
            +APYDLV+QTK+LGRLPVV F            +MMQLGCD            DPVKRA+AIV+AVT+Y D  VLAEVSCGLGEAMVGLNL D KVERFASRSE
Sbjct:  207 AAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD-KVERFASRSE 309          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_STELP (Probable pyridoxal biosynthesis protein PDX1 (Fragment) OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.038e-19
Identity = 51/89 (57.30%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 274
            SA YDLVMQTKQLGRLPVV+F            +MMQLGCD            DP KRA+AIV+AVTHYSDP++L     GLGEAMVG+
Sbjct:  129 SAAYDLVMQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPDLLGRGEFGLGEAMVGI 217          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_SCHPO (Probable pyridoxine biosynthesis PDX1-like protein OS=Schizosaccharomyces pombe GN=snz1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.498e-18
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 313
            +AP DLV +  QLGRLPVV+F            +MMQLGCD            DP KRA+AIVRAVTHY+DP++LAEVS  LG AMVG ++S   + E+ A+R
Sbjct:  192 AAPIDLVKECAQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFLSGDPAKRARAIVRAVTHYNDPKILAEVSENLGAAMVGRSVSSLEEKEKLATR 294          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_EMENI (Pyridoxine biosynthesis protein pyroA OS=Emericella nidulans GN=pyroA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.498e-18
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 298
            APY+L+ +  + GRLPVV+F            +MMQLGCD            D  KRA+AIV+AVTHY DP+VLAEVS GLGEAMVG+N+S  K E
Sbjct:  201 APYELLREAAEKGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDAKKRAKAIVQAVTHYKDPKVLAEVSQGLGEAMVGINVSHMKDE 296          
The following BLAST results are available for this feature:
BLAST of EY679696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PDX1_PHAVU6.928e-3267.31Pyridoxal biosynthesis protein PDX1 OS=Phaseolus v... [more]
PDX1_HEVBR2.229e-3064.42Probable pyridoxal biosynthesis protein PDX1 OS=He... [more]
PDX13_ARATH2.229e-3064.42Pyridoxal biosynthesis protein PDX1.3 OS=Arabidops... [more]
PDX11_ORYSJ1.445e-2964.42Probable pyridoxal biosynthesis protein PDX1.1 OS=... [more]
PDX1_GINBI7.926e-2859.62Probable pyridoxal biosynthesis protein PDX1 OS=Gi... [more]
PDX12_ORYSJ3.012e-2762.26Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDX11_ARATH3.012e-2764.42Pyridoxal biosynthesis protein PDX1.1 OS=Arabidops... [more]
PDX1_STELP1.038e-1957.30Probable pyridoxal biosynthesis protein PDX1 (Frag... [more]
PDX1_SCHPO1.498e-1850.49Probable pyridoxine biosynthesis PDX1-like protein... [more]
PDX1_EMENI1.498e-1852.08Pyridoxine biosynthesis protein pyroA OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-A06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679696 ID=EY679696; Name=EY679696; organism=Citrus sinensis; type=EST; length=1003bp
CCACGCGTCCGCGCCGTACGACTTGGTGATGCAGACGAAGCAGCTGGGGC
GGTTGCCGGTGGTGCACTTCGCAGCGGGAGGAGTGGCGACGCCGGCGGAT
GCAGCGATGATGATGCAACTTGGATGCGACGGAGTGTTTGTCGGGTCGGG
CGTGTTTAAGAGCGGGGACCCGGTGAAGCGGGCCCAGGCAATTGTACGGG
CGGTGACTCATTACAGTGACCCGGAGGTGTTGGCGGAGGTGAGCTGCGGG
TTGGGCGAGGCCATGGTGGGTCTTAATTTGAGTGACCACAAGGTTGAGAG
GTTCGCTAGTCGCTCCGAATAAATGAAAGAGATGAGGTCCCGAAGCCCTT
TATTAATCATTATCTGTAAGCTTTTTCCTTTTTCTTTAAATCTTATGTAG
TAAGCGGGATTCAAACTTCAAACCGCAGTAGTTGTCGTAATGTTTTCTTT
GGGTGTTAGTTCAATTTACACAACTTGTCAATTGAAAACTCTGTTCTTCT
TTACCAATATGAATATTTTACGCTCGGAATGTTTGTTGCGGAGGTTGATG
ATATGCCTGGCTTTTTTTCAATAATGAAAATATTTGCAGCAAGGGATCTT
TTTTTTTTTTTTTTTTTTAAATATTATTTAAAAGACCATGATGTATCCTC
ATGCCTATGTTGTTTTGCTTTTATGCCGTTTATTTCTTTGACTGGGAATT
TATGACTAATTTTTTCGGCCTTTCCAAACTTTTTTTGGTAAATTTTGGTC
CCCATCTGGCAAGGGAGGCCCCCAATATTTAAAATTTGGCTGGGCCGTTG
TTGGGCCTAATGGTTTAAATAATGGCAAAAGTTTAAAAAATGTTTTCTTT
CCAAGGGGGAGGGGTTTTGTTTTTAGGTTTTTTTGGTCCTTTTTTTTTTT
TTGTTCCCCCGGGTGAGCCCAATTCCTCTTTTTTCCCTTTGGGTATAAGG
GGGCGCAGCGGGGAAAATGGGGAAAAGGCCCTCCCGCGGCCCCCCTCTAA
ACT
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