EY679690

Overview
NameEY679690
Unique NameEY679690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679690 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.662e-26
Identity = 73/174 (41.95%), Postives = 90/174 (51.72%), Query Frame = 2
Query:  110 SPLSMQNLPKGLTVSSKPT----DSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 607
            SP  +QN  K     S PT    + S     TA+AGA+FS+LS  +                  DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP                 DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:   17 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPP---PEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187          
BLAST of EY679690 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.171e-22
Identity = 76/195 (38.97%), Postives = 93/195 (47.69%), Query Frame = 2
Query:   41 LNAKCFXXXXXXXXXXXGATKPTS-PLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXX----GDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 610
            LN KC             + KPTS P+S+   P GL+ S  P   S +    AIAGA+F+TL S D                  DNRG            WVLFNILQPALNQIN+MR+ K   I            + +                   D+RG LLL+VV PAI WVL+NILQPALNQ+N+MRS+
Sbjct:   12 LNTKCLTLNTNKTTST--SPKPTSKPISLS--PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLAT---PEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 199          
The following BLAST results are available for this feature:
BLAST of EY679690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH8.662e-2641.95Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL1.171e-2238.97Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-H11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679690 ID=EY679690; Name=EY679690; organism=Citrus sinensis; type=EST; length=934bp
CCCACGCGTCCGGGCAGCAGCAATGGCTACAACGGCTGTGCTCAATGCCA
AGTGCTTCAGCATCAGCTCCCCCAAAAGCAGCATCAAGCCTGGAGCCACA
AAACCCACTTCCCCGCTCTCCATGCAAAACCTCCCAAAAGGCCTCACGGT
CTCATCAAAACCAACCGATTCATCATCACTAGCAGCCGGCACCGCCATTG
CCGGAGCAATCTTCTCAACTCTGAGCTCATGCGATGCTGCTTTTGCCGCA
CAACAAATAGCAGAAATAGCGGAAGGTGACAACCGAGGGTTAGCACTATT
GCTCCCAATCATCCCGGCCATAGCCTGGGTGCTGTTCAACATTCTGCAGC
CAGCACTCAACCAAATCAACCGCATGCGCAGCACCAAGGGTGTGATCATT
GGGCTCGGGCTTGGTGGGTTGGCCGCAACAGGGCTGATGTCTATGCCACC
CCATGCATCGGCTGCGGCCAGTGAAGTTGCCACGATTGCTGAAGCCGCTA
GTGACAGCAGGGGTCAGCTTCTGCTTATTGTTGTTACTCCTGCTATTCTC
TGGGTGCTTTACAACATTTTGCAGCCGGCTCTGAACCAAATCAACAGGAT
GAGGTCCGAGTGAGAGATTAATTCTGTTGGAATAGGTGTAATACAATGAA
TTTTTCTTGGAATTGCACCTCACGTTGTCCATGAACTACCTTCTTTCTTT
TTTTTGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGCC
GCTCCAAAAGAACCAAGCTTAACTAACCCGGGCATGCAACGTCAAACCTC
TTTCAAAGTGGGCCCCAAAATTAATTCCATGGGCCCTTTTTTAAAAACTC
CGGGAAGGGAGAAAAACCCGGGGGTTTACCAAAATATAAACCCCCTTTGG
ACAAAACCCCCCCCTTTTTCCCCCCCCGGGGGGA
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