EY679454

Overview
NameEY679454
Unique NameEY679454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1081
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 2.006e-64
Identity = 128/169 (75.74%), Postives = 142/169 (84.02%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDSTKCLKWFWRLSSREILKRL 607
            YLFKIVIIGDSAVGKSNLL+RYARNEFNP+SKATIGVEFQTQSM IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITR +TF+++ RWLDEL THSDTTVA+ML+GNKCDLESIR VS EEGKS      G+F  E   LDST  +K  + +  REI   +
Sbjct:   11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKS-LAESEGLFFMETSALDSTN-VKTAFEMVIREIYSNI 177          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.421e-64
Identity = 125/151 (82.78%), Postives = 135/151 (89.40%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDST 553
            YLFKIV+IGDSAVGKSNLLSRYARNEF+ +SKATIGVEFQTQSMEI+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITRRTTF+S+ RWLDELK HSDTTVARMLVGNKCDLE+IR VS EEGK+      G+F  E   LDST
Sbjct:   11 YLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKA-LAEEEGLFFVETSALDST 160          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 6.264e-50
Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDSTKCLKWFWRLSSREILKRLYGREGP*ISEKITEVEIN 661
            YLFK+V+IGDS VGKSNLLSR+ RNEF+  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+  TF+++ RWL EL+ H+D+ +  MLVGNK DL+ +R V TE  ++ C  R G+   E   L+ST   K F     ++IL  +Y      +S+K+ + E N
Sbjct:   11 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFC-EREGLSFIETSALESTNVEKAF-----QQILTEIYHI----VSKKVLDSEDN 187          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 2.380e-49
Identity = 98/170 (57.65%), Postives = 127/170 (74.71%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDSTKCLKWFWRLSSREILKRLY 610
            YLFK+V+IGDS VGKSNLLSR+ RNEF+  SK+TIGVEF T+S+++DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TF+++ RWL EL+ H+D  +  MLVGNK DL  +  V T+EGK+    R  ++  E   L+ST     F      E+L ++Y
Sbjct:   13 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKA-FAERESLYFMETSALESTNVENAF-----AEVLTQIY 176          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.109e-49
Identity = 91/132 (68.94%), Postives = 112/132 (84.85%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKS 496
            YLFK+V+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+++++DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR TF+++ RWL ELK H+D  +  MLVGNK DL  +  V TE+GKS
Sbjct:   12 YLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKS 143          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.060e-49
Identity = 98/170 (57.65%), Postives = 126/170 (74.12%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDSTKCLKWFWRLSSREILKRLY 610
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+ IDGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR TTF++  RWL EL+ H+D  +  ML+GNK DL  +  VSTE+GK+    +  ++  E   L++T     F      E+L ++Y
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKA-FAEKESLYFMETSALEATNVENAF-----SEVLTQIY 175          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 5.303e-49
Identity = 100/170 (58.82%), Postives = 123/170 (72.35%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDSTKCLKWFWRLSSREILKRLY 610
            YLFK+V+IGDS VGKSNLLSR++RNEFN  SK+TIGVEF T+S+ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDITR  TF+++ RWL EL+ H+D  +  MLVGNK DL  +R VSTE+ K+    R   F  E   L+S      F      E+L  +Y
Sbjct:   13 YLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKA-FAERENTFFMETSALESLNVENAF-----TEVLTEIY 176          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 6.926e-49
Identity = 95/151 (62.91%), Postives = 121/151 (80.13%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDST 553
            Y+FK+V+IGDSAVGKS LL+R+ARNEFN  SKATIGVEFQT+++ ID + VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +FD ++RWL+EL+ H+D  +  ML+GNK DL ++R V TE+ K     R  +F  E   L+ST
Sbjct:   17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKE-FAERENLFFMETSALEST 166          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.632e-48
Identity = 94/151 (62.25%), Postives = 121/151 (80.13%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDST 553
            Y+FK+V+IGDSAVGKS +L+R+ARNEF+  SK+TIGVEFQT+++ ID K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R TFD I RWL+EL+ H+D  +  +L+GNKCDL + R V TE+ K     + G+F  E   L++T
Sbjct:   16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKE-FAEKEGLFFLETSALEAT 165          
BLAST of EY679454 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.489e-48
Identity = 96/170 (56.47%), Postives = 125/170 (73.53%), Query Frame = 2
Query:  101 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRKVSTEEGKSPCTNRRGVFTWELLHLDSTKCLKWFWRLSSREILKRLY 610
            YLFK+V+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+++ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR TF++ +RWL EL+ H+D  +  ML+GNK DL  +  V TE+GKS    R  ++  E   L++T     F      E+L ++Y
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKS-FAERESLYFMETSALEATNVENAF-----TEVLTQIY 175          
The following BLAST results are available for this feature:
BLAST of EY679454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA4_ARATH2.006e-6475.74Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH3.421e-6482.78Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTC6_CHLRE6.264e-5055.08Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RIC2_ORYSJ2.380e-4957.65Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH3.109e-4968.94Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11E_LOTJA4.060e-4957.65Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC5.303e-4958.82Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RGP1_ORYSJ6.926e-4962.91Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA2.632e-4862.25Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_LOTJA4.489e-4856.47Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-057-D05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679454 ID=EY679454; Name=EY679454; organism=Citrus sinensis; type=EST; length=1081bp
GGCCGCGGTACGGTCCGGATTCCGGGTCGACCACGCGTCCGGGAATTAAT
TCAAAACGATGTCCTTTTCGGATGAAGAAGGAGGAGGAGGAGGGGAGGAG
TACTTGTTCAAGATCGTGATAATCGGCGACTCGGCGGTGGGGAAATCGAA
CCTACTGTCTCGTTACGCTCGGAACGAGTTCAATCCTCACTCGAAGGCGA
CAATTGGAGTCGAGTTTCAAACGCAGAGCATGGAGATCGACGGCAAGGAA
GTCAAGGCTCAGATTTGGGACACCGCCGGCCAGGAGCGCTTCCGCGCCGT
CACTTCTGCTTACTACAGAGGCGCCGTCGGTGCTCTCATTGTTTACGACA
TTACCAGGCGTACCACTTTTGACAGCATCTCTCGCTGGCTCGATGAGCTC
AAGACTCATTCTGATACCACTGTGGCAAGGATGCTGGTCGGGAACAAATG
TGATTTGGAGAGTATCCGGAAAGTGAGCACTGAAGAAGGCAAAAGCCCTT
GCACAAACAGAAGGGGTGTTTTTACATGGGAACTTCTGCATTTGGACTCA
ACAAAATGTTTAAAATGGTTTTGGAGATTGTCATCCCGAGAGATTTTAAA
GCGATTGTACGGCAGGGAAGGTCCCTGAATTTCAGAAAAGATTACTGAAG
TCGAAATTAATCTCTTCTACCGGGGGTAACCCCCCGTAAAAACCTTGATA
ATCAATAGGAATCAAAAGAAGAAAAATCCAAGTAATTTTTCTGTAGGTTT
GACCTAAGGGGGGAATCTATTATTTCCTTTAATTAAATATAACCCTCCCC
AAAAAACTTGAAAAGCACTGGGATATTTAATCTCACAAGAGGATTTGGGG
ATGTACGTAGTTTTTTAAAAATGGTTATTAATTGTTTTTTTGACGGCCTT
GGTTGTGTTGTGGTGTTAGTAATGGTGCACACAAAAAAAATGGGAACAAA
TTTTTTAATGGGGGGGCCATAGTACATAATATATATCACCTCAAATAAAA
ATTGAGGTTGGGTGAATGTGGATTAAAAATTGATAAAATGATTGTATAGA
TTCATAATTTTATGTTAGTTAACATACATTC
back to top